Result of FASTA (omim) for
pFN21AE3155
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3155, 373 aa
1>>>pF1KE3155 373 - 373 aa - 373 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3028+/-0.000424; mu= 16.6202+/- 0.026
mean_var=64.1971+/-13.111, 0's: 0 Z-trim(109.8): 15 B-trim: 64 in 1/48
Lambda= 0.160072
statistics sampled from 17978 (17989) to 17978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.58), E-opt: 0.2 (0.211), width: 16
Scan time: 7.980
The best scores are: opt bits E(85289)
NP_001013641 (OMIM: 614681) hydroxylysine kinase i ( 373) 2437 571.9 8.4e-163
XP_016877411 (OMIM: 614681) PREDICTED: hydroxylysi ( 262) 1433 339.9 3.9e-93
NP_001077081 (OMIM: 614681) hydroxylysine kinase i ( 220) 1420 336.9 2.7e-92
XP_011519533 (OMIM: 614681) PREDICTED: hydroxylysi ( 168) 1010 242.1 6.8e-64
>>NP_001013641 (OMIM: 614681) hydroxylysine kinase isofo (373 aa)
initn: 2437 init1: 2437 opt: 2437 Z-score: 3043.8 bits: 571.9 E(85289): 8.4e-163
Smith-Waterman score: 2437; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KE3 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 EKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDMGQKAVEEIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDMGQKAVEEIW
310 320 330 340 350 360
370
pF1KE3 FETAKSYESGISM
:::::::::::::
NP_001 FETAKSYESGISM
370
>>XP_016877411 (OMIM: 614681) PREDICTED: hydroxylysine k (262 aa)
initn: 1433 init1: 1433 opt: 1433 Z-score: 1793.0 bits: 339.9 E(85289): 3.9e-93
Smith-Waterman score: 1433; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE3 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA
:::::::::::::::::::::::::::::::::::::::::
XP_016 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECCFPFLCYINYAAMNPLVQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV
XP_016 SPNPRNWATQQEVSRGKASITA
250 260
>>NP_001077081 (OMIM: 614681) hydroxylysine kinase isofo (220 aa)
initn: 1420 init1: 1420 opt: 1420 Z-score: 1778.0 bits: 336.9 E(85289): 2.7e-92
Smith-Waterman score: 1420; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE3 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA
::::::::::::::::::::::::::::::::::::::::
NP_001 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE
190 200 210 220
250 260 270 280 290 300
pF1KE3 SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV
>>XP_011519533 (OMIM: 614681) PREDICTED: hydroxylysine k (168 aa)
initn: 1008 init1: 1008 opt: 1010 Z-score: 1268.0 bits: 242.1 E(85289): 6.8e-64
Smith-Waterman score: 1010; 96.4% identity (98.2% similar) in 167 aa overlap (1-166:1-167)
10 20 30 40 50 60
pF1KE3 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQR-FHHPKLSSLHRENFIWNLK
:::::::::::::::::::::::::::::::::::::::. . ::.
XP_011 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQEEIPSPKVK
130 140 150 160
180 190 200 210 220 230
pF1KE3 NVPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKS
373 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:15:55 2016 done: Thu Nov 3 18:15:56 2016
Total Scan time: 7.980 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]