FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3152, 364 aa
  1>>>pF1KE3152 364 - 364 aa - 364 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9849+/-0.000323; mu= 15.0844+/- 0.020
 mean_var=111.4953+/-22.719, 0's: 0 Z-trim(118.3): 16  B-trim: 0 in 0/56
 Lambda= 0.121464
 statistics sampled from 31192 (31206) to 31192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.366), width:  16
 Scan time:  8.800

The best scores are:                                      opt bits E(85289)
NP_004188 (OMIM: 604977) serine/threonine-protein  ( 364) 2485 445.9 6.5e-125
NP_115830 (OMIM: 604977) serine/threonine-protein  ( 368) 2467 442.8 5.9e-124


>>NP_004188 (OMIM: 604977) serine/threonine-protein kina  (364 aa)
 initn: 2485 init1: 2485 opt: 2485  Z-score: 2363.5  bits: 445.9 E(85289): 6.5e-125
Smith-Waterman score: 2485; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)

               10        20        30        40        50        60
pF1KE3 MQKWFSAFDDAIIQRQWRANPSRGGGGVSFTKEVDTNVATGAPPRRQRVPGRACPWREPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MQKWFSAFDDAIIQRQWRANPSRGGGGVSFTKEVDTNVATGAPPRRQRVPGRACPWREPI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RGRRGARPGGGDAGGTPGETVRHCSAPEDPIFRFSSLHSYPFPGTIKSRDMSWKRHHLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RGRRGARPGGGDAGGTPGETVRHCSAPEDPIFRFSSLHSYPFPGTIKSRDMSWKRHHLIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ETFGVKRRRKRGPVESDPLRGEPGSARAAVSELMQLFPRGLFEDALPPIVLRSQVYSLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ETFGVKRRRKRGPVESDPLRGEPGSARAAVSELMQLFPRGLFEDALPPIVLRSQVYSLVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRVLKACDGRPYAGAVQKFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRVLKACDGRPYAGAVQKFLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 SVLPACGDLSFQQDQMTQTFGFRDSEITHLVNAGVLTVRDAGSWWLAVPGAGRFIKYFVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SVLPACGDLSFQQDQMTQTFGFRDSEITHLVNAGVLTVRDAGSWWLAVPGAGRFIKYFVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 GRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTSGTLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTSGTLLR
              310       320       330       340       350       360

           
pF1KE3 LPET
       ::::
NP_004 LPET
           

>>NP_115830 (OMIM: 604977) serine/threonine-protein kina  (368 aa)
 initn: 1549 init1: 1549 opt: 2467  Z-score: 2346.4  bits: 442.8 E(85289): 5.9e-124
Smith-Waterman score: 2467; 98.9% identity (98.9% similar) in 368 aa overlap (1-364:1-368)

               10        20        30        40        50        60
pF1KE3 MQKWFSAFDDAIIQRQWRANPSRGGGGVSFTKEVDTNVATGAPPRRQRVPGRACPWREPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MQKWFSAFDDAIIQRQWRANPSRGGGGVSFTKEVDTNVATGAPPRRQRVPGRACPWREPI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RGRRGARPGGGDAGGTPGETVRHCSAPEDPIFRFSSLHSYPFPGTIKSRDMSWKRHHLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 RGRRGARPGGGDAGGTPGETVRHCSAPEDPIFRFSSLHSYPFPGTIKSRDMSWKRHHLIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ETFGVKRRRKRGPVESDPLRGEPGSARAAVSELMQLFPRGLFEDALPPIVLRSQVYSLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 ETFGVKRRRKRGPVESDPLRGEPGSARAAVSELMQLFPRGLFEDALPPIVLRSQVYSLVP
              130       140       150       160       170       180

              190       200       210       220           230      
pF1KE3 DRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRV----LKACDGRPYAGAVQ
       ::::::::::::::::::::::::::::::::::::::::::    ::::::::::::::
NP_115 DRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRVCDCVLKACDGRPYAGAVQ
              190       200       210       220       230       240

        240       250       260       270       280       290      
pF1KE3 KFLASVLPACGDLSFQQDQMTQTFGFRDSEITHLVNAGVLTVRDAGSWWLAVPGAGRFIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 KFLASVLPACGDLSFQQDQMTQTFGFRDSEITHLVNAGVLTVRDAGSWWLAVPGAGRFIK
              250       260       270       280       290       300

        300       310       320       330       340       350      
pF1KE3 YFVKGRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 YFVKGRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTSG
              310       320       330       340       350       360

        360    
pF1KE3 TLLRLPET
       ::::::::
NP_115 TLLRLPET
               




364 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:51:26 2016 done: Sun Nov  6 16:51:28 2016
 Total Scan time:  8.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]