Result of FASTA (omim) for
pFN21AE3150
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3150, 358 aa
1>>>pF1KE3150 358 - 358 aa - 358 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0265+/-0.000378; mu= 18.4211+/- 0.023
mean_var=65.4998+/-13.567, 0's: 0 Z-trim(113.2): 28 B-trim: 2022 in 2/52
Lambda= 0.158473
statistics sampled from 22419 (22443) to 22419 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.263), width: 16
Scan time: 5.440
The best scores are: opt bits E(85289)
NP_904356 (OMIM: 609098) F-box only protein 25 iso ( 358) 2497 579.6 3.5e-165
XP_011533050 (OMIM: 609098) PREDICTED: F-box only ( 367) 2284 530.9 1.7e-150
NP_904357 (OMIM: 609098) F-box only protein 25 iso ( 367) 2284 530.9 1.7e-150
XP_016868802 (OMIM: 609098) PREDICTED: F-box only ( 367) 2284 530.9 1.7e-150
NP_036305 (OMIM: 609098) F-box only protein 25 iso ( 291) 1815 423.7 2.6e-118
XP_011533051 (OMIM: 609098) PREDICTED: F-box only ( 300) 1602 375.0 1.2e-103
NP_478136 (OMIM: 606604) F-box only protein 32 iso ( 355) 1547 362.4 8.5e-100
XP_016868803 (OMIM: 609098) PREDICTED: F-box only ( 336) 1395 327.7 2.4e-89
NP_680482 (OMIM: 606604) F-box only protein 32 iso ( 210) 921 219.2 6.8e-57
NP_001229392 (OMIM: 606604) F-box only protein 32 ( 262) 618 150.0 5.8e-36
>>NP_904356 (OMIM: 609098) F-box only protein 25 isoform (358 aa)
initn: 2497 init1: 2497 opt: 2497 Z-score: 3086.4 bits: 579.6 E(85289): 3.5e-165
Smith-Waterman score: 2497; 99.7% identity (100.0% similar) in 358 aa overlap (1-358:1-358)
10 20 30 40 50 60
pF1KE3 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNHCNISHSIILNSEDGEIFNNEEH
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_904 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 FALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 FALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF
310 320 330 340 350
>>XP_011533050 (OMIM: 609098) PREDICTED: F-box only prot (367 aa)
initn: 2284 init1: 2284 opt: 2284 Z-score: 2823.1 bits: 530.9 E(85289): 1.7e-150
Smith-Waterman score: 2469; 97.3% identity (97.5% similar) in 367 aa overlap (1-358:1-367)
10 20 30 40 50 60
pF1KE3 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNHCNISHSIILNSEDGEIFNNEEH
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_011 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 FALQKHYPAKEQYGDTLHFCRHCSILFWKD---------SGHPCTAADPDSCFTPVSPQH
:::::::::::::::::::::::::::::: :::::::::::::::::::::
XP_011 FALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSPQH
310 320 330 340 350 360
pF1KE3 FIDLFKF
:::::::
XP_011 FIDLFKF
>>NP_904357 (OMIM: 609098) F-box only protein 25 isoform (367 aa)
initn: 2284 init1: 2284 opt: 2284 Z-score: 2823.1 bits: 530.9 E(85289): 1.7e-150
Smith-Waterman score: 2469; 97.3% identity (97.5% similar) in 367 aa overlap (1-358:1-367)
10 20 30 40 50 60
pF1KE3 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNHCNISHSIILNSEDGEIFNNEEH
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_904 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 FALQKHYPAKEQYGDTLHFCRHCSILFWKD---------SGHPCTAADPDSCFTPVSPQH
:::::::::::::::::::::::::::::: :::::::::::::::::::::
NP_904 FALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSPQH
310 320 330 340 350 360
pF1KE3 FIDLFKF
:::::::
NP_904 FIDLFKF
>>XP_016868802 (OMIM: 609098) PREDICTED: F-box only prot (367 aa)
initn: 2284 init1: 2284 opt: 2284 Z-score: 2823.1 bits: 530.9 E(85289): 1.7e-150
Smith-Waterman score: 2469; 97.3% identity (97.5% similar) in 367 aa overlap (1-358:1-367)
10 20 30 40 50 60
pF1KE3 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNHCNISHSIILNSEDGEIFNNEEH
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_016 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 FALQKHYPAKEQYGDTLHFCRHCSILFWKD---------SGHPCTAADPDSCFTPVSPQH
:::::::::::::::::::::::::::::: :::::::::::::::::::::
XP_016 FALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSPQH
310 320 330 340 350 360
pF1KE3 FIDLFKF
:::::::
XP_016 FIDLFKF
>>NP_036305 (OMIM: 609098) F-box only protein 25 isoform (291 aa)
initn: 1813 init1: 1813 opt: 1815 Z-score: 2245.0 bits: 423.7 E(85289): 2.6e-118
Smith-Waterman score: 1815; 94.0% identity (97.2% similar) in 283 aa overlap (78-358:9-291)
50 60 70 80 90 100
pF1KE3 NSEDGEIFNNEEHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTK--ERHGYCTLGE
.....:.: . : :. .:::::::::
NP_036 MEKYSIMKSMNMHRKKGKRTILEMTQILKRHGYCTLGE
10 20 30
110 120 130 140 150 160
pF1KE3 AFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHN
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE3 PRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNG
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE3 LTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRH
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE3 LILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFT
220 230 240 250 260 270
350
pF1KE3 PVSPQHFIDLFKF
:::::::::::::
NP_036 PVSPQHFIDLFKF
280 290
>>XP_011533051 (OMIM: 609098) PREDICTED: F-box only prot (300 aa)
initn: 1600 init1: 1600 opt: 1602 Z-score: 1981.7 bits: 375.0 E(85289): 1.2e-103
Smith-Waterman score: 1787; 91.1% identity (94.2% similar) in 292 aa overlap (78-358:9-300)
50 60 70 80 90 100
pF1KE3 NSEDGEIFNNEEHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTK--ERHGYCTLGE
.....:.: . : :. .:::::::::
XP_011 MEKYSIMKSMNMHRKKGKRTILEMTQILKRHGYCTLGE
10 20 30
110 120 130 140 150 160
pF1KE3 AFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHN
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE3 PRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNG
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE3 LTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRH
160 170 180 190 200 210
290 300 310 320 330
pF1KE3 LILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWKD---------SGHPCT
::::::::::::::::::::::::::::::::::::::::::::: ::::::
XP_011 LILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCT
220 230 240 250 260 270
340 350
pF1KE3 AADPDSCFTPVSPQHFIDLFKF
::::::::::::::::::::::
XP_011 AADPDSCFTPVSPQHFIDLFKF
280 290 300
>>NP_478136 (OMIM: 606604) F-box only protein 32 isoform (355 aa)
initn: 1545 init1: 1388 opt: 1547 Z-score: 1912.7 bits: 362.4 E(85289): 8.5e-100
Smith-Waterman score: 1547; 61.4% identity (84.2% similar) in 360 aa overlap (1-358:1-355)
10 20 30 40 50
pF1KE3 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNHCNISHSIILNSEDGEIFNNE
:::::::::::: .:.:: ::::: :. .. . ...:: . . :.:. .::.
NP_478 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCN---KEVYNKEN--LFNSL
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD
... :.:::::: . . :.:: :..:::::::: :::::::::::::::::::::.:: :
NP_478 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS
:::::::.::.::::::::::::.::::..:::.:.: :::.:..: :::..::: : .
NP_478 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN
.:: :.. :::::::::::.:. :.:::: :::::...:.:. . .:::..:::: . :
NP_478 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL
:. :.::: :...:::..: :..::::: ::::::::::.:.:. ..::::.::...::
NP_478 IMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE3 MYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF
::: : . :: ::::::::..:.:: :: :: . ::::: .:.:: . .::: ::.::::
NP_478 MYFKLVRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
300 310 320 330 340 350
>>XP_016868803 (OMIM: 609098) PREDICTED: F-box only prot (336 aa)
initn: 1389 init1: 1389 opt: 1395 Z-score: 1725.2 bits: 327.7 E(85289): 2.4e-89
Smith-Waterman score: 2186; 88.8% identity (89.1% similar) in 367 aa overlap (1-358:1-336)
10 20 30 40 50 60
pF1KE3 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNHCNISHSIILNSEDGEIFNNEEH
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_016 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
::::::::::::::::::::::::::::::::::::
XP_016 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKE------------------------
70 80 90
130 140 150 160 170 180
pF1KE3 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -------LLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
100 110 120 130 140
190 200 210 220 230 240
pF1KE3 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE3 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
210 220 230 240 250 260
310 320 330 340 350
pF1KE3 FALQKHYPAKEQYGDTLHFCRHCSILFWKD---------SGHPCTAADPDSCFTPVSPQH
:::::::::::::::::::::::::::::: :::::::::::::::::::::
XP_016 FALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSPQH
270 280 290 300 310 320
pF1KE3 FIDLFKF
:::::::
XP_016 FIDLFKF
330
>>NP_680482 (OMIM: 606604) F-box only protein 32 isoform (210 aa)
initn: 921 init1: 921 opt: 921 Z-score: 1142.4 bits: 219.2 E(85289): 6.8e-57
Smith-Waterman score: 921; 60.3% identity (85.2% similar) in 209 aa overlap (150-358:2-210)
120 130 140 150 160 170
pF1KE3 RRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSST
:::.:.: :::.:..: :::..::: : ..
NP_680 MNILEKVVLKVLEDQQNIRLIRELLQTLYTS
10 20 30
180 190 200 210 220 230
pF1KE3 LCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNI
:: :.. :::::::::::.:. :.:::: :::::...:.:. . .:::..:::: . ::
NP_680 LCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNI
40 50 60 70 80 90
240 250 260 270 280 290
pF1KE3 LYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLM
. :.::: :...:::..: :..::::: ::::::::::.:.:. ..::::.::...:: :
NP_680 MQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKM
100 110 120 130 140 150
300 310 320 330 340 350
pF1KE3 YFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF
:: : . :: ::::::::..:.:: :: :: . ::::: .:.:: . .::: ::.::::
NP_680 YFKLVRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
160 170 180 190 200 210
>>NP_001229392 (OMIM: 606604) F-box only protein 32 isof (262 aa)
initn: 1115 init1: 618 opt: 618 Z-score: 766.7 bits: 150.0 E(85289): 5.8e-36
Smith-Waterman score: 936; 44.4% identity (60.8% similar) in 360 aa overlap (1-358:1-262)
10 20 30 40 50
pF1KE3 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNHCNISHSIILNSEDGEIFNNE
:::::::::::: .:.:: ::::: :. .. . ...:: . . :.:. .::.
NP_001 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCN---KEVYNKEN--LFNSL
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD
... :.:::::: . . :.:: :..:::::::: :::::::::::::::::::::.:: :
NP_001 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS
:::::::. : .
NP_001 SRRFNYVVR--------------------------------------PAF----------
120
180 190 200 210 220 230
pF1KE3 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN
.:::..:::: . :
NP_001 ---------------------------------------------KGLTFTDLPLCLQLN
130 140
240 250 260 270 280 290
pF1KE3 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL
:. :.::: :...:::..: :..::::: ::::::::::.:.:. ..::::.::...::
NP_001 IMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK
150 160 170 180 190 200
300 310 320 330 340 350
pF1KE3 MYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF
::: : . :: ::::::::..:.:: :: :: . ::::: .:.:: . .::: ::.::::
NP_001 MYFKLVRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
210 220 230 240 250 260
358 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:07:01 2016 done: Mon Nov 7 19:07:02 2016
Total Scan time: 5.440 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]