FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3144, 354 aa
  1>>>pF1KE3144 354 - 354 aa - 354 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0094+/-0.000775; mu= 10.9308+/- 0.047
 mean_var=169.1304+/-34.226, 0's: 0 Z-trim(115.1): 56  B-trim: 0 in 0/52
 Lambda= 0.098620
 statistics sampled from 15559 (15616) to 15559 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.48), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS11540.2 UBE2Z gene_id:65264|Hs108|chr17        ( 354) 2478 364.0 1.1e-100
CCDS33175.2 BIRC6 gene_id:57448|Hs108|chr2         (4857)  406 70.4 3.7e-11


>>CCDS11540.2 UBE2Z gene_id:65264|Hs108|chr17             (354 aa)
 initn: 2478 init1: 2478 opt: 2478  Z-score: 1921.1  bits: 364.0 E(32554): 1.1e-100
Smith-Waterman score: 2478; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KE3 MAESPTEEAATAGAGAAGPGASSVAGVVGVSGSGGGFGPPFLPDVWAAAAAAGGAGGPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAESPTEEAATAGAGAAGPGASSVAGVVGVSGSGGGFGPPFLPDVWAAAAAAGGAGGPGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GLAPLPGLPPSAAAHGAALLSHWDPTLSSDWDGERTAPQCLLRIKRDIMSIYKEPPPGMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GLAPLPGLPPSAAAHGAALLSHWDPTLSSDWDGERTAPQCLLRIKRDIMSIYKEPPPGMF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 FYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDSKNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDSKNY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 NECIRHETIRVAVCDMMEGKCPCPEPLRGVMEKSFLEYYDFYEVACKDRLHLQGQTMQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NECIRHETIRVAVCDMMEGKCPCPEPLRGVMEKSFLEYYDFYEVACKDRLHLQGQTMQDP
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KE3 FGEKRGHFDYQSLLMRLGLIRQKVLERLHNENAEMDSDSSSSGTETDLHGSLRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FGEKRGHFDYQSLLMRLGLIRQKVLERLHNENAEMDSDSSSSGTETDLHGSLRV
              310       320       330       340       350    

>>CCDS33175.2 BIRC6 gene_id:57448|Hs108|chr2              (4857 aa)
 initn: 467 init1: 290 opt: 406  Z-score: 313.8  bits: 70.4 E(32554): 3.7e-11
Smith-Waterman score: 446; 35.0% identity (63.4% similar) in 254 aa overlap (119-353:4597-4844)

       90       100       110       120       130       140        
pF1KE3 SDWDGERTAPQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFF
                                     .::  :   .  ...::::: :::: .: :
CCDS33 NDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCF
       4570      4580      4590      4600      4610      4620      

      150       160       170       180       190          200     
pF1KE3 LFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG-PA--WSP-AQ
        :    : :::  :: :.: :::...::::::.: .::::::::.:: : :   :.: ..
CCDS33 EFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTS
       4630      4640      4650      4660      4670      4680      

          210        220       230           240       250         
pF1KE3 SISSVLISIQSL-MTENPYHNEPGFEQERH-PG---DSKNYNECIRHETIRVAVCDMMEG
       :. .::.:.::: .. .:: ::::.:. :  :.   .:..:.  ::. :.. :. .....
CCDS33 SFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRN
       4690      4700      4710      4720      4730      4740      

     260       270       280         290        300       310      
pF1KE3 KCPCPEPLRGVMEKSFLEYYDFYEVA--CKDRL-HLQGQTMQDPFGEKRGHFDYQSLLMR
         ::   .. :..: :  :    :.   :.. .  .:  . .   :.  .:    .:  .
CCDS33 PSPC---FKEVIHKHF--YLKRVEIMAQCEEWIADIQQYSSDKRVGRTMSHHA-AALKRH
       4750           4760      4770      4780      4790       4800

        320       330              340       350                
pF1KE3 LGLIRQKVLERLHNENAEMDSD-------SSSSGTETDLHGSLRV            
        . .:...:.    :. . :.:       ..... :: .: ...             
CCDS33 TAQLREELLKLPCPEGLDPDTDDAPEVCRATTGAEETLMHDQVKPSSSKELPSDFQL
             4810      4820      4830      4840      4850       




354 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:27:25 2016 done: Sun Nov  6 03:27:25 2016
 Total Scan time:  3.260 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]