Result of FASTA (omim) for
pFN21AE3137
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3137, 348 aa
1>>>pF1KE3137 348 - 348 aa - 348 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0285+/-0.000333; mu= 18.5165+/- 0.021
mean_var=72.4893+/-14.680, 0's: 0 Z-trim(115.3): 31 B-trim: 0 in 0/53
Lambda= 0.150639
statistics sampled from 25634 (25652) to 25634 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.301), width: 16
Scan time: 6.720
The best scores are: opt bits E(85289)
NP_699167 (OMIM: 611310) L-seryl-tRNA(Sec) kinase ( 348) 2364 522.8 4.3e-148
XP_016871129 (OMIM: 611310) PREDICTED: L-seryl-tRN ( 358) 1969 437.0 3.1e-122
XP_016871130 (OMIM: 611310) PREDICTED: L-seryl-tRN ( 236) 1610 358.8 6.9e-99
>>NP_699167 (OMIM: 611310) L-seryl-tRNA(Sec) kinase [Hom (348 aa)
initn: 2364 init1: 2364 opt: 2364 Z-score: 2779.6 bits: 522.8 E(85289): 4.3e-148
Smith-Waterman score: 2364; 99.7% identity (99.7% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KE3 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_699 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_699 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_699 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CPLETCLQRNGQRPQALPPETIHLMRRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_699 CPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_699 DLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSE
250 260 270 280 290 300
310 320 330 340
pF1KE3 MTFKQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLSTG
::::::::::::::::::::::::::::::::::::::::::::::::
NP_699 MTFKQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLSTG
310 320 330 340
>>XP_016871129 (OMIM: 611310) PREDICTED: L-seryl-tRNA(Se (358 aa)
initn: 1969 init1: 1969 opt: 1969 Z-score: 2315.5 bits: 437.0 E(85289): 3.1e-122
Smith-Waterman score: 1969; 99.0% identity (99.3% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KE3 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CPLETCLQRNGQRPQALPPETIHLMRRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_016 CPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSE
:::::::::::::::::::::::::::::::::::::::::::::::::::: .:
XP_016 DLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKDEQVLPHN
250 260 270 280 290 300
310 320 330 340
pF1KE3 MTFKQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLSTG
XP_016 LKLLAEELNKLKAEFLEDLKQGNKKYLCFQQTIDIPDVISFFHYEKDNIVQKYFSKQH
310 320 330 340 350
>>XP_016871130 (OMIM: 611310) PREDICTED: L-seryl-tRNA(Se (236 aa)
initn: 1610 init1: 1610 opt: 1610 Z-score: 1896.3 bits: 358.8 E(85289): 6.9e-99
Smith-Waterman score: 1610; 99.6% identity (99.6% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE3 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CPLETCLQRNGQRPQALPPETIHLMRRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT
::::::::::::::::::::::::: :::::::::::::::::::::::::::::
XP_016 CPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEAR
190 200 210 220 230
250 260 270 280 290 300
pF1KE3 DLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSE
348 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:20:02 2016 done: Sun Nov 6 15:20:03 2016
Total Scan time: 6.720 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]