FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3136, 348 aa
  1>>>pF1KE3136 348 - 348 aa - 348 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6066+/-0.000711; mu= 15.3655+/- 0.043
 mean_var=77.5039+/-15.331, 0's: 0 Z-trim(110.7): 18  B-trim: 0 in 0/52
 Lambda= 0.145684
 statistics sampled from 11805 (11820) to 11805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.363), width:  16
 Scan time:  2.880

The best scores are:                                      opt bits E(32554)
CCDS31002.1 YOD1 gene_id:55432|Hs108|chr1          ( 348) 2373 507.8 5.4e-144
CCDS60402.1 YOD1 gene_id:55432|Hs108|chr1          ( 304) 1930 414.7 5.1e-116


>>CCDS31002.1 YOD1 gene_id:55432|Hs108|chr1               (348 aa)
 initn: 2373 init1: 2373 opt: 2373  Z-score: 2698.7  bits: 507.8 E(32554): 5.4e-144
Smith-Waterman score: 2373; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)

               10        20        30        40        50        60
pF1KE3 MFGPAKGRHFGVHPAPGFPGGVSQQAAGTKAGPAGAWPVGSRTDTMWRLRCKAKDGTHVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MFGPAKGRHFGVHPAPGFPGGVSQQAAGTKAGPAGAWPVGSRTDTMWRLRCKAKDGTHVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QGLSSRTRVRELQGQIAAITGIAPGGQRILVGYPPECLDLSNGDTILEDLPIQSGDMLII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QGLSSRTRVRELQGQIAAITGIAPGGQRILVGYPPECLDLSNGDTILEDLPIQSGDMLII
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EEDQTRPRSSPAFTKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EEDQTRPRSSPAFTKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 EMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 TQTVRIDRFGEDAGYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDDIVLVQALEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TQTVRIDRFGEDAGYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDDIVLVQALEL
              250       260       270       280       290       300

              310       320       330       340        
pF1KE3 ADEARRRRQFTDVNRFTLRCMVCQKGLTGQAEAREHAKETGHTNFGEV
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ADEARRRRQFTDVNRFTLRCMVCQKGLTGQAEAREHAKETGHTNFGEV
              310       320       330       340        

>>CCDS60402.1 YOD1 gene_id:55432|Hs108|chr1               (304 aa)
 initn: 1929 init1: 1929 opt: 1930  Z-score: 2196.3  bits: 414.7 E(32554): 5.1e-116
Smith-Waterman score: 1930; 95.4% identity (97.7% similar) in 305 aa overlap (44-348:2-304)

            20        30        40        50        60        70   
pF1KE3 PAPGFPGGVSQQAAGTKAGPAGAWPVGSRTDTMWRLRCKAKDGTHVLQGLSSRTRVRELQ
                                     .:.  .  .::. :  ..::::::::::::
CCDS60                              METLHIIYSEAKSFT--VEGLSSRTRVRELQ
                                            10          20         

            80        90       100       110       120       130   
pF1KE3 GQIAAITGIAPGGQRILVGYPPECLDLSNGDTILEDLPIQSGDMLIIEEDQTRPRSSPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GQIAAITGIAPGGQRILVGYPPECLDLSNGDTILEDLPIQSGDMLIIEEDQTRPRSSPAF
      30        40        50        60        70        80         

           140       150       160       170       180       190   
pF1KE3 TKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIAQIVASD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIAQIVASD
      90       100       110       120       130       140         

           200       210       220       230       240       250   
pF1KE3 PDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDA
     150       160       170       180       190       200         

           260       270       280       290       300       310   
pF1KE3 GYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDDIVLVQALELADEARRRRQFTDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDDIVLVQALELADEARRRRQFTDV
     210       220       230       240       250       260         

           320       330       340        
pF1KE3 NRFTLRCMVCQKGLTGQAEAREHAKETGHTNFGEV
       :::::::::::::::::::::::::::::::::::
CCDS60 NRFTLRCMVCQKGLTGQAEAREHAKETGHTNFGEV
     270       280       290       300    




348 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:42:49 2016 done: Mon Nov  7 16:42:50 2016
 Total Scan time:  2.880 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]