FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3135, 345 aa
  1>>>pF1KE3135 345 - 345 aa - 345 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1229+/-0.000824; mu= 17.1344+/- 0.049
 mean_var=62.3048+/-12.718, 0's: 0 Z-trim(106.6): 25  B-trim: 464 in 1/48
 Lambda= 0.162485
 statistics sampled from 9052 (9064) to 9052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS13118.1 NDUFAF5 gene_id:79133|Hs108|chr20      ( 345) 2333 555.4 2.5e-158
CCDS33441.1 NDUFAF5 gene_id:79133|Hs108|chr20      ( 317) 1267 305.5 3.9e-83


>>CCDS13118.1 NDUFAF5 gene_id:79133|Hs108|chr20           (345 aa)
 initn: 2333 init1: 2333 opt: 2333  Z-score: 2956.0  bits: 555.4 E(32554): 2.5e-158
Smith-Waterman score: 2333; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
              250       260       270       280       290       300

              310       320       330       340     
pF1KE3 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
              310       320       330       340     

>>CCDS33441.1 NDUFAF5 gene_id:79133|Hs108|chr20           (317 aa)
 initn: 2013 init1: 1267 opt: 1267  Z-score: 1606.0  bits: 305.5 E(32554): 3.9e-83
Smith-Waterman score: 1956; 86.4% identity (89.3% similar) in 345 aa overlap (1-345:1-317)

               10        20        30        40        50        60
pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI
       :::::::::::::::::::::::::::::::::::::::::::::::::    ..:.   
CCDS33 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKL---QLFHC--
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP
        .. :.. :.  .  .                      : ::::::::::::::::::::
CCDS33 -RKLLESFSKLTLQKM----------------------LCLHWVNDLPRALEQIHYILKP
          120       130                             140       150  

              190       200       210       220       230       240
pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
            220       230       240       250       260       270  

              310       320       330       340     
pF1KE3 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
            280       290       300       310       




345 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:07:20 2016 done: Sun Nov  6 13:07:20 2016
 Total Scan time:  2.280 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]