Result of FASTA (omim) for
pFN21AE3133
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3133, 339 aa
1>>>pF1KE3133 339 - 339 aa - 339 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9097+/-0.000382; mu= 10.9561+/- 0.024
mean_var=143.6743+/-28.863, 0's: 0 Z-trim(117.5): 11 B-trim: 642 in 1/53
Lambda= 0.107000
statistics sampled from 29504 (29514) to 29504 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.346), width: 16
Scan time: 7.870
The best scores are: opt bits E(85289)
XP_005263409 (OMIM: 616013,616033) PREDICTED: tRNA ( 339) 2286 364.2 2.3e-100
NP_001128137 (OMIM: 616013,616033) tRNA methyltran ( 339) 2286 364.2 2.3e-100
NP_001128138 (OMIM: 616013,616033) tRNA methyltran ( 339) 2286 364.2 2.3e-100
NP_689505 (OMIM: 616013,616033) tRNA methyltransfe ( 339) 2286 364.2 2.3e-100
XP_006714480 (OMIM: 616013,616033) PREDICTED: tRNA ( 339) 2286 364.2 2.3e-100
NP_060289 (OMIM: 615423,616974) mitochondrial ribo ( 403) 275 53.8 7.5e-07
>>XP_005263409 (OMIM: 616013,616033) PREDICTED: tRNA met (339 aa)
initn: 2286 init1: 2286 opt: 2286 Z-score: 1922.7 bits: 364.2 E(85289): 2.3e-100
Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
250 260 270 280 290 300
310 320 330
pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
:::::::::::::::::::::::::::::::::::::::
XP_005 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
310 320 330
>>NP_001128137 (OMIM: 616013,616033) tRNA methyltransfer (339 aa)
initn: 2286 init1: 2286 opt: 2286 Z-score: 1922.7 bits: 364.2 E(85289): 2.3e-100
Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
250 260 270 280 290 300
310 320 330
pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
:::::::::::::::::::::::::::::::::::::::
NP_001 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
310 320 330
>>NP_001128138 (OMIM: 616013,616033) tRNA methyltransfer (339 aa)
initn: 2286 init1: 2286 opt: 2286 Z-score: 1922.7 bits: 364.2 E(85289): 2.3e-100
Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
250 260 270 280 290 300
310 320 330
pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
:::::::::::::::::::::::::::::::::::::::
NP_001 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
310 320 330
>>NP_689505 (OMIM: 616013,616033) tRNA methyltransferase (339 aa)
initn: 2286 init1: 2286 opt: 2286 Z-score: 1922.7 bits: 364.2 E(85289): 2.3e-100
Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
250 260 270 280 290 300
310 320 330
pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
:::::::::::::::::::::::::::::::::::::::
NP_689 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
310 320 330
>>XP_006714480 (OMIM: 616013,616033) PREDICTED: tRNA met (339 aa)
initn: 2286 init1: 2286 opt: 2286 Z-score: 1922.7 bits: 364.2 E(85289): 2.3e-100
Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
250 260 270 280 290 300
310 320 330
pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
:::::::::::::::::::::::::::::::::::::::
XP_006 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
310 320 330
>>NP_060289 (OMIM: 615423,616974) mitochondrial ribonucl (403 aa)
initn: 184 init1: 152 opt: 275 Z-score: 244.0 bits: 53.8 E(85289): 7.5e-07
Smith-Waterman score: 275; 25.2% identity (62.6% similar) in 246 aa overlap (38-276:140-380)
10 20 30 40 50 60
pF1KE3 AFIETSNVDKKQGINEDQEESQKPRLGEGCEPISK-RQMKKLIKQKQWEEQRELRKQKRK
: ..: ::.:: .: :: .... .
NP_060 EHITEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETT
110 120 130 140 150 160
70 80 90 100 110 120
pF1KE3 EKRKRKKLERQCQMEPNSD-GHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKKLHKQI
:. :.:.. . : : . : .. ... :..: .... : :.... .:.
NP_060 EEDKQKNFLFLRLWDRNMDIAMGWKGAQ--AMQFGQPLVFDMAYENYMKRKELQNTVSQL
170 180 190 200 210 220
130 140 150 160 170 180
pF1KE3 QRCYAENRRALHPVQFYLTSH--GGQLKKNMDENDKGWVNWKDIHIKPEHYS--ELIKKE
. . ::: . : ..:. . : :.... . . .: . . . : .:. :.
NP_060 LESEGWNRRNVDPFHIYFCNLKIDGALHRELVK--RYQEKWDKLLLTSTEKSHVDLFPKD
230 240 250 260 270 280
190 200 210 220 230 240
pF1KE3 DLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKMN
..::::.::::.. . ..:.::::..::.. . : . .:. .. ::: .... .
NP_060 SIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWE
290 300 310 320 330 340
250 260 270 280 290 300
pF1KE3 -SRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
. : :.......:.: .. .::::. ..:.::
NP_060 IGNKNLTLDQMIRILLCLKNNGNWQEAL-QFVPKRKHTGFLEISQHSQEFINRLKKAKT
350 360 370 380 390 400
310 320 330
pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
339 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:23:14 2016 done: Sun Nov 6 17:23:15 2016
Total Scan time: 7.870 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]