FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3132, 336 aa
  1>>>pF1KE3132 336 - 336 aa - 336 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2590+/-0.000964; mu= 8.5702+/- 0.058
 mean_var=133.1378+/-26.330, 0's: 0 Z-trim(109.6): 9  B-trim: 272 in 1/52
 Lambda= 0.111154
 statistics sampled from 11030 (11035) to 11030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.339), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS47121.1 AIMP1 gene_id:9255|Hs108|chr4          ( 336) 2161 357.6 8.4e-99
CCDS3674.1 AIMP1 gene_id:9255|Hs108|chr4           ( 312) 2007 332.9 2.2e-91
CCDS368.1 YARS gene_id:8565|Hs108|chr1             ( 528)  597 106.9 3.8e-23


>>CCDS47121.1 AIMP1 gene_id:9255|Hs108|chr4               (336 aa)
 initn: 2161 init1: 2161 opt: 2161  Z-score: 1887.3  bits: 357.6 E(32554): 8.4e-99
Smith-Waterman score: 2161; 100.0% identity (100.0% similar) in 336 aa overlap (1-336:1-336)

               10        20        30        40        50        60
pF1KE3 MLPAVAVSEPVVLRFMIFCRLLAKMANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLPAVAVSEPVVLRFMIFCRLLAKMANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP
              250       260       270       280       290       300

              310       320       330      
pF1KE3 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK
       ::::::::::::::::::::::::::::::::::::
CCDS47 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK
              310       320       330      

>>CCDS3674.1 AIMP1 gene_id:9255|Hs108|chr4                (312 aa)
 initn: 2007 init1: 2007 opt: 2007  Z-score: 1754.3  bits: 332.9 E(32554): 2.2e-91
Smith-Waterman score: 2007; 100.0% identity (100.0% similar) in 312 aa overlap (25-336:1-312)

               10        20        30        40        50        60
pF1KE3 MLPAVAVSEPVVLRFMIFCRLLAKMANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA
                               ::::::::::::::::::::::::::::::::::::
CCDS36                         MANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA
                                       10        20        30      

               70        80        90       100       110       120
pF1KE3 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV
         40        50        60        70        80        90      

              130       140       150       160       170       180
pF1KE3 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD
        100       110       120       130       140       150      

              190       200       210       220       230       240
pF1KE3 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA
        160       170       180       190       200       210      

              250       260       270       280       290       300
pF1KE3 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP
        220       230       240       250       260       270      

              310       320       330      
pF1KE3 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK
       ::::::::::::::::::::::::::::::::::::
CCDS36 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK
        280       290       300       310  

>>CCDS368.1 YARS gene_id:8565|Hs108|chr1                  (528 aa)
 initn: 564 init1: 391 opt: 597  Z-score: 529.0  bits: 106.9 E(32554): 3.8e-23
Smith-Waterman score: 597; 48.7% identity (76.4% similar) in 195 aa overlap (147-332:332-526)

        120       130       140       150       160         170    
pF1KE3 SENVIQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIA-GSA-DSKPI
                                     : .:. . .    .::. .: : : .:.: 
CCDS36 EVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPE
             310       320       330       340       350       360 

            180       190       200       210       220       230  
pF1KE3 DV--SRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVI
       .:  ::::.:.: :::..:::::::::::..::::  :::::::::. :: :..:.:.:.
CCDS36 EVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVV
             370       380       390       400       410       420 

            240       250          260       270       280         
pF1KE3 LLCNLKPAKMRGVLSQAMVMCASSP---EKIEILAPPNGSVPGDRITFDAFP-GEPDKEL
       .:::::: ::::: ::.:..:::     ...: : :: ::.::...   ..  :.::.::
CCDS36 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEEL
             430       440       450       460       470       480 

      290       300       310       320        330      
pF1KE3 NPKKKIWEQIQPDLHTNDECVATYKGVPFEVK-GKGVCRAQTMSNSGIK
       .::::..:..: :.. ..::.: .: . : .: :.  :..   .:    
CCDS36 KPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS  
             490       500       510       520          




336 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:19:54 2016 done: Sun Nov  6 17:19:55 2016
 Total Scan time:  2.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]