FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3130, 323 aa
  1>>>pF1KE3130 323 - 323 aa - 323 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4115+/-0.00111; mu= 3.2039+/- 0.066
 mean_var=198.3825+/-41.225, 0's: 0 Z-trim(109.5): 18  B-trim: 232 in 2/50
 Lambda= 0.091059
 statistics sampled from 10903 (10914) to 10903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.335), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS6253.2 OTUD6B gene_id:51633|Hs108|chr8         ( 323) 2081 285.7 3.5e-77
CCDS69513.1 OTUD6B gene_id:51633|Hs108|chr8        ( 192) 1228 173.4 1.3e-43
CCDS14395.1 OTUD6A gene_id:139562|Hs108|chrX       ( 288) 1057 151.1 9.9e-37


>>CCDS6253.2 OTUD6B gene_id:51633|Hs108|chr8              (323 aa)
 initn: 2081 init1: 2081 opt: 2081  Z-score: 1499.2  bits: 285.7 E(32554): 3.5e-77
Smith-Waterman score: 2081; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)

               10        20        30        40        50        60
pF1KE3 MEPRVRVEGWKVPTSRCRFLLARVLGYLVVMEAVLTEELDEEEQLLRRHRKEKKELQAKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEPRVRVEGWKVPTSRCRFLLARVLGYLVVMEAVLTEELDEEEQLLRRHRKEKKELQAKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QGMKNAVPKNDKKRRKQLTEDVAKLEKEMEQKHREELEQLKLTTKENKIDSVAVNISNLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QGMKNAVPKNDKKRRKQLTEDVAKLEKEMEQKHREELEQLKLTTKENKIDSVAVNISNLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LENQPPRISKAQKRREKKAALEKEREERIAEAEIENLTGARHMESEKLAQILAARQLEIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LENQPPRISKAQKRREKKAALEKEREERIAEAEIENLTGARHMESEKLAQILAARQLEIK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 EFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEYSKKPLILVYMRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEYSKKPLILVYMRH
              250       260       270       280       290       300

              310       320   
pF1KE3 AYGLGEHYNSVTRLVNIVTENCS
       :::::::::::::::::::::::
CCDS62 AYGLGEHYNSVTRLVNIVTENCS
              310       320   

>>CCDS69513.1 OTUD6B gene_id:51633|Hs108|chr8             (192 aa)
 initn: 1228 init1: 1228 opt: 1228  Z-score: 896.7  bits: 173.4 E(32554): 1.3e-43
Smith-Waterman score: 1228; 99.5% identity (100.0% similar) in 189 aa overlap (135-323:4-192)

          110       120       130       140       150       160    
pF1KE3 KENKIDSVAVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEAEIENLTGARHME
                                     .:::::::::::::::::::::::::::::
CCDS69                            MISKEKKAALEKEREERIAEAEIENLTGARHME
                                          10        20        30   

          170       180       190       200       210       220    
pF1KE3 SEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYMQSHVEDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYMQSHVEDF
            40        50        60        70        80        90   

          230       240       250       260       270       280    
pF1KE3 LPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIV
           100       110       120       130       140       150   

          290       300       310       320   
pF1KE3 GEEYSKKPLILVYMRHAYGLGEHYNSVTRLVNIVTENCS
       :::::::::::::::::::::::::::::::::::::::
CCDS69 GEEYSKKPLILVYMRHAYGLGEHYNSVTRLVNIVTENCS
           160       170       180       190  

>>CCDS14395.1 OTUD6A gene_id:139562|Hs108|chrX            (288 aa)
 initn: 1056 init1: 507 opt: 1057  Z-score: 772.9  bits: 151.1 E(32554): 9.9e-37
Smith-Waterman score: 1057; 56.7% identity (85.5% similar) in 275 aa overlap (41-314:7-275)

               20        30        40        50        60        70
pF1KE3 KVPTSRCRFLLARVLGYLVVMEAVLTEELDEEEQLLRRHRKEKKELQAKIQGMKNAVPKN
                                     :....::::..:..::::.:...::.:::.
CCDS14                         MDDPKSEQQRILRRHQRERQELQAQIRSLKNSVPKT
                                       10        20        30      

               80        90       100       110       120       130
pF1KE3 DKKRRKQLTEDVAKLEKEMEQKHREELEQLKLTTKENKIDSVAVNISNLVLENQPPRISK
       :: .:::: .:::..: :: ::::.:::...    ...:.::. ..... :::.::: ::
CCDS14 DKTKRKQLLQDVARMEAEMAQKHRQELEKFQ---DDSSIESVVEDLAKMNLENRPPRSSK
         40        50        60           70        80        90   

              140       150        160       170       180         
pF1KE3 AQKRREKKAALEKEREERIAEAEI-ENLTGARHMESEKLAQILAARQLEIKQIPSDGHCM
       :...::.  . :.::.: : .::. :.:.: .. : :::: ::.:: ::.: ::.:::::
CCDS14 AHRKRERMESEERERQESIFQAEMSEHLAGFKREEEEKLAAILGARGLEMKAIPADGHCM
           100       110       120       130       140       150   

     190       200       210       220       230       240         
pF1KE3 YKAIEDQLKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDI
       :.::.:::     ...:  :: .:: ::..::..::::..::.:.: .  ..:. ::..:
CCDS14 YRAIQDQLV---FSVSVEMLRCRTASYMKKHVDEFLPFFSNPETSDSFGYDDFMIYCDNI
           160          170       180       190       200       210

     250       260       270       280       290       300         
pF1KE3 VNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEYSKKPLILVYMRHAYGLGEHYN
       : :.:::::::::::::.:.::::.:::::: .:.:::: :::.::::.:.::.::::::
CCDS14 VRTTAWGGQLELRALSHVLKTPIEVIQADSPTLIIGEEYVKKPIILVYLRYAYSLGEHYN
              220       230       240       250       260       270

     310       320       
pF1KE3 SVTRLVNIVTENCS    
       ::: :             
CCDS14 SVTPLEAGAAGGVLPRLL
              280        




323 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:05:43 2016 done: Sun Nov  6 16:05:43 2016
 Total Scan time:  2.660 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]