Result of FASTA (ccds) for
pFN21AE3126
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3126, 318 aa
1>>>pF1KE3126 318 - 318 aa - 318 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0823+/-0.000796; mu= 5.8731+/- 0.048
mean_var=196.5620+/-39.409, 0's: 0 Z-trim(116.1): 67 B-trim: 161 in 1/52
Lambda= 0.091480
statistics sampled from 16611 (16678) to 16611 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.512), width: 16
Scan time: 2.770
The best scores are: opt bits E(32554)
CCDS7655.2 FOXI2 gene_id:399823|Hs108|chr10 ( 318) 2203 302.2 3.4e-82
CCDS4372.1 FOXI1 gene_id:2299|Hs108|chr5 ( 378) 896 129.8 3.3e-30
CCDS77433.1 FOXI3 gene_id:344167|Hs108|chr2 ( 420) 781 114.7 1.3e-25
CCDS47337.1 FOXI1 gene_id:2299|Hs108|chr5 ( 283) 648 97.0 1.9e-20
CCDS75259.1 FOXD1 gene_id:2297|Hs108|chr5 ( 465) 568 86.6 4.1e-17
CCDS550.1 FOXE3 gene_id:2301|Hs108|chr1 ( 319) 551 84.2 1.5e-16
CCDS4473.1 FOXC1 gene_id:2296|Hs108|chr6 ( 553) 550 84.3 2.4e-16
CCDS13147.1 FOXA2 gene_id:3170|Hs108|chr20 ( 457) 548 84.0 2.5e-16
CCDS46585.1 FOXA2 gene_id:3170|Hs108|chr20 ( 463) 548 84.0 2.5e-16
CCDS624.1 FOXD3 gene_id:27022|Hs108|chr1 ( 478) 531 81.7 1.2e-15
CCDS10958.1 FOXC2 gene_id:2303|Hs108|chr16 ( 501) 529 81.5 1.5e-15
CCDS13192.1 FOXS1 gene_id:2307|Hs108|chr20 ( 330) 524 80.7 1.8e-15
CCDS4472.1 FOXF2 gene_id:2295|Hs108|chr6 ( 444) 516 79.7 4.6e-15
CCDS35078.1 FOXE1 gene_id:2304|Hs108|chr9 ( 373) 514 79.4 4.8e-15
CCDS10959.1 FOXL1 gene_id:2300|Hs108|chr16 ( 345) 508 78.6 7.9e-15
CCDS12677.1 FOXA3 gene_id:3171|Hs108|chr19 ( 350) 504 78.1 1.2e-14
CCDS30708.1 FOXD2 gene_id:2306|Hs108|chr1 ( 495) 502 77.9 1.8e-14
CCDS4471.1 FOXQ1 gene_id:94234|Hs108|chr6 ( 403) 488 76.0 5.5e-14
CCDS9636.1 FOXG1 gene_id:2290|Hs108|chr14 ( 489) 481 75.1 1.2e-13
CCDS10957.2 FOXF1 gene_id:2294|Hs108|chr16 ( 379) 477 74.5 1.4e-13
CCDS9665.1 FOXA1 gene_id:3169|Hs108|chr14 ( 472) 476 74.5 1.9e-13
CCDS3105.1 FOXL2 gene_id:668|Hs108|chr3 ( 376) 468 73.3 3.3e-13
CCDS75845.1 FOXD4L4 gene_id:349334|Hs108|chr9 ( 416) 455 71.7 1.2e-12
CCDS47977.1 FOXD4L5 gene_id:653427|Hs108|chr9 ( 416) 455 71.7 1.2e-12
CCDS43833.1 FOXD4L3 gene_id:286380|Hs108|chr9 ( 417) 455 71.7 1.2e-12
CCDS43826.1 FOXD4L6 gene_id:653404|Hs108|chr9 ( 417) 455 71.7 1.2e-12
CCDS2117.1 FOXD4L1 gene_id:200350|Hs108|chr2 ( 408) 446 70.5 2.6e-12
CCDS32255.1 FOXB1 gene_id:27023|Hs108|chr15 ( 325) 438 69.3 4.6e-12
CCDS34975.1 FOXD4 gene_id:2298|Hs108|chr9 ( 439) 438 69.4 5.7e-12
CCDS35045.1 FOXB2 gene_id:442425|Hs108|chr9 ( 432) 417 66.7 3.9e-11
>>CCDS7655.2 FOXI2 gene_id:399823|Hs108|chr10 (318 aa)
initn: 2203 init1: 2203 opt: 2203 Z-score: 1589.1 bits: 302.2 E(32554): 3.4e-82
Smith-Waterman score: 2203; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KE3 MATYCDDLGPSSAPPGQAQATAHPPGYEPGDLGAVGGGPLLWVNAPALSPKSYASGPGPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MATYCDDLGPSSAPPGQAQATAHPPGYEPGDLGAVGGGPLLWVNAPALSPKSYASGPGPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PPYAAPSYGAPGPLLGAPGGLAGADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PPYAAPSYGAPGPLLGAPGGLAGADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 NCEKMFDNGNFRRKRKRRAEASAAVRSGARSVGGAEAPALEPPSAACLDLQASPSPSAPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NCEKMFDNGNFRRKRKRRAEASAAVRSGARSVGGAEAPALEPPSAACLDLQASPSPSAPE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 AATCFSGFASAMSALAGGLGTFPGGLAGDFSFGRRPPTVATHAPQTLNPSPGFAPGHQTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AATCFSGFASAMSALAGGLGTFPGGLAGDFSFGRRPPTVATHAPQTLNPSPGFAPGHQTA
250 260 270 280 290 300
310
pF1KE3 AAGFRLSHLLYSREGTEV
::::::::::::::::::
CCDS76 AAGFRLSHLLYSREGTEV
310
>>CCDS4372.1 FOXI1 gene_id:2299|Hs108|chr5 (378 aa)
initn: 867 init1: 799 opt: 896 Z-score: 655.9 bits: 129.8 E(32554): 3.3e-30
Smith-Waterman score: 915; 54.3% identity (75.6% similar) in 254 aa overlap (17-258:39-291)
10 20 30 40
pF1KE3 MATYCDDLGPSSAPPGQAQATAHPPGYEPGDLGAVGGGPLLWVNAP
:. . . :..: : .. .: :: :.:
CCDS43 PSPPRCSPQFPSIGQEPPEMNLYYENFFHPQGVPSPQRPSFEGGGEYGATPNPYLWFNGP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 ALSPKSYASGPGPAPPYAAPSYGAPGPLLGAPGGLAGADLAWLSLSGQQELLRLVRPPYS
...: : ::. : :. .::. ::: . .::.:.::.:: . .:.::..:::::::
CCDS43 TMTPPPYLPGPN-ASPFLPQAYGVQRPLLPSVSGLGGSDLGWLPIPSQEELMKLVRPPYS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 YSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRD
:::::::::..:: ..::::::::::: :::::..:::::::::::::::::::::::::
CCDS43 YSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRD
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 EDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRAEASAAVRSGARSVGGAEAPALEPPSAA
:::::::::::::::::::::::::::::::....:... : : . :. : ..
CCDS43 EDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDVSSSTASLALEKTESSLPVDSPKTTE
190 200 210 220 230 240
230 240 250 260 270
pF1KE3 CLDLQASPSP----SAPE--------AATCFSGFASAMSALAGGLGTFPGGLAGDFSFGR
:. . :: :.:: .: :...: :.:.: ..:
CCDS43 PQDILDGASPGGTTSSPEKRPSPPPSGAPCLNSFLSSMTAYVSGGSPTSHPLVTPGLSPE
250 260 270 280 290 300
280 290 300 310
pF1KE3 RPPTVATHAPQTLNPSPGFAPGHQTAAAGFRLSHLLYSREGTEV
CCDS43 PSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVLSQFSPHFYNSVNTS
310 320 330 340 350 360
>>CCDS77433.1 FOXI3 gene_id:344167|Hs108|chr2 (420 aa)
initn: 825 init1: 726 opt: 781 Z-score: 573.3 bits: 114.7 E(32554): 1.3e-25
Smith-Waterman score: 813; 52.4% identity (68.5% similar) in 292 aa overlap (8-267:39-320)
10 20 30
pF1KE3 MATYCDDLGPSSAPPGQAQATAHPPGYEPGDLGAVGG
:. .:::. :.:.: . : .:::
CCDS77 FGVYSQPGLPPPAATAAAPGAPPAARAPYGLADYAAPPA---AAANPYLWLNGP--GVGG
10 20 30 40 50 60
40 50 60 70 80
pF1KE3 GPLLWVNA--------PALSPKSYASGPGPAPPYAAPSYGA-------PGPLLGA-PGGL
: . : : : . :.:: :: :: ..: :.: : :..
CCDS77 PPSAAAAAAAAYLGAPPPPPPPGAAAGPFLQPPPAAGTFGCSQRPFAQPAPAAPASPAAP
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE3 AG-ADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYK
:: ..:.:::......:...::::::::::::::::::: ::::::.:::.:: .::::.
CCDS77 AGPGELGWLSMASREDLMKMVRPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQ
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE3 RSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS77 RSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRSE
190 200 210 220 230 240
210 220 230 240
pF1KE3 AS-----AA--------VRSGARS-VGGAEAPALEPPSAACLDLQASPSPSAPEAA-TCF
:: :: . :: : ::: : : ::. :. : :: ::.. .
CCDS77 ASNGSTVAAGTSKSEEGLSSGLGSGVGG--KPEEESPSTL---LRPSHSPEPPEGTKSTA
250 260 270 280 290
250 260 270 280 290 300
pF1KE3 SGFASAMSALAGGLGTFPGGLAGDFSFGRRPPTVATHAPQTLNPSPGFAPGHQTAAAGFR
:. .. : . . :.:: ..:.
CCDS77 SSPGGPMLTSTPCLNTFFSSLSSLSVSSSVSTQRALPGSRHLGIQGAQLPSSGVFSPTSI
300 310 320 330 340 350
>>CCDS47337.1 FOXI1 gene_id:2299|Hs108|chr5 (283 aa)
initn: 630 init1: 562 opt: 648 Z-score: 480.7 bits: 97.0 E(32554): 1.9e-20
Smith-Waterman score: 648; 60.4% identity (81.2% similar) in 154 aa overlap (17-170:39-191)
10 20 30 40
pF1KE3 MATYCDDLGPSSAPPGQAQATAHPPGYEPGDLGAVGGGPLLWVNAP
:. . . :..: : .. .: :: :.:
CCDS47 PSPPRCSPQFPSIGQEPPEMNLYYENFFHPQGVPSPQRPSFEGGGEYGATPNPYLWFNGP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 ALSPKSYASGPGPAPPYAAPSYGAPGPLLGAPGGLAGADLAWLSLSGQQELLRLVRPPYS
...: : ::. : :. .::. ::: . .::.:.::.:: . .:.::..:::::::
CCDS47 TMTPPPYLPGPN-ASPFLPQAYGVQRPLLPSVSGLGGSDLGWLPIPSQEELMKLVRPPYS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 YSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRD
:::::::::..:: ..::::::::::: :::::..:::::::::::::::::::::::::
CCDS47 YSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRD
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 EDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRAEASAAVRSGARSVGGAEAPALEPPSAA
::::
CCDS47 EDDPAYVSGGSPTSHPLVTPGLSPEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMP
190 200 210 220 230 240
>>CCDS75259.1 FOXD1 gene_id:2297|Hs108|chr5 (465 aa)
initn: 542 init1: 505 opt: 568 Z-score: 420.8 bits: 86.6 E(32554): 4.1e-17
Smith-Waterman score: 578; 40.9% identity (60.2% similar) in 279 aa overlap (55-301:83-356)
30 40 50 60 70 80
pF1KE3 PGYEPGDLGAVGGGPLLWVNAPALSPKSYASGPGPAPPYAAPSYGAPGPLLGAPGGLAGA
.: .:::: ::. :: . :. :: .::
CCDS75 RRRRRSYAGEDELEDLEEEEDDDDILLAPPAGGSPAPPGPAPAAGAGA---GGGGGGGGA
60 70 80 90 100
90 100 110 120 130 140
pF1KE3 DLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKA
. . :: .. ::.::::: :::.::: ..: ..::::.: ....: ::.:...
CCDS75 GGGGSAGSGAKN--PLVKPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFP
110 120 130 140 150 160
150 160 170 180 190
pF1KE3 GWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKR-------
.::::::::::::::: :.::. .:::::::::::. :::::.: :.:::
CCDS75 AWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGSFLRRRKRFKRQPLL
170 180 190 200 210 220
200 210 220 230
pF1KE3 ---RAEASAAVRSGARSVGGAEAPA----LEPPSA------------AC-LDLQASP--S
: : . . :: ..::: :: : ::. .: :: :
CCDS75 PPNAAAAESLLLRGAGAAGGAGDPAAAAALFPPAPPPPPHAYGYGPYGCGYGLQLPPYAP
230 240 250 260 270 280
240 250 260 270 280 290
pF1KE3 PSAPEAATCFSGFASAMSALAGGLGTFPGGLAGDFS---FGRRPPTVATHAPQTLNPSPG
::: ::. .. :.:. . : : :.... :: :: ... : : : .
CCDS75 PSALFAAAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAA
290 300 310 320 330 340
300 310
pF1KE3 FAPGHQTAAAGFRLSHLLYSREGTEV
: : ..:
CCDS75 KAGGPGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSG
350 360 370 380 390 400
>>CCDS550.1 FOXE3 gene_id:2301|Hs108|chr1 (319 aa)
initn: 509 init1: 449 opt: 551 Z-score: 410.8 bits: 84.2 E(32554): 1.5e-16
Smith-Waterman score: 559; 42.4% identity (57.6% similar) in 269 aa overlap (34-291:12-266)
10 20 30 40 50 60
pF1KE3 YCDDLGPSSAPPGQAQATAHPPGYEPGDLGAVGGGPLLWVNAPALSPKSYASG--PGPAP
: .: : : . ::. : : .: :: :
CCDS55 MAGRSDMDPPAAFSGFPALPAVAPSGPPPSPLAGAEPGREP
10 20 30 40
70 80 90 100 110
pF1KE3 PYAAPSYG--APGPLLGAPGGLAGADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAP
:: . : :: : ::: : ... :. .::::: ::::::. ::
CCDS55 EEAAAGRGEAAPTP---APG--PGRR--------RRRPLQRGKPPYSYIALIAMALAHAP
50 60 70 80
120 130 140 150 160 170
pF1KE3 LRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLD
:.:::. ::.... : ::. : :::::::::.::::: ::::. .::::::::::
CCDS55 GRRLTLAAIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCFVKVPREPGNPGKGNYWTLD
90 100 110 120 130 140
180 190 200 210 220 230
pF1KE3 PNCEKMFDNGNFRRKRKR--RAE--ASAAVRSGARSVGGAEAPALEPPSAACL--DLQAS
: :::::.: :.::: ::: : ::. : . :: :. : : .:.
CCDS55 PAAADMFDNGSFLRRRKRFKRAELPAHAAAAPGP-PLPFPYAPYAPAPGPALLVPPPSAG
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE3 PSPSAPEAATCFSGFASAMSALAG-GLGTFPGGLAGDFSFGRRPPTVATHAPQTLNPSPG
:.:: : ..... . ::: : : : : . . :: .:. .: . :
CCDS55 PGPSPPARLFSVDSLVNLQPELAGLGAPEPPCCAAPDAAAAAFPPCAAAASPPLYSQVPD
210 220 230 240 250 260
300 310
pF1KE3 FAPGHQTAAAGFRLSHLLYSREGTEV
CCDS55 RLVLPATRPGPGPLPAEPLLALAGPAAALGPLSPGEAYLRQPGFASGLERYL
270 280 290 300 310
>>CCDS4473.1 FOXC1 gene_id:2296|Hs108|chr6 (553 aa)
initn: 537 init1: 473 opt: 550 Z-score: 406.9 bits: 84.3 E(32554): 2.4e-16
Smith-Waterman score: 593; 36.0% identity (59.0% similar) in 322 aa overlap (29-316:10-320)
10 20 30 40 50
pF1KE3 MATYCDDLGPSSAPPGQAQATAHPPGYEPGDLGAV---GGGPLLWVNAPALSPKSYASGP
:..::.: :: . : : . .:.. :
CCDS44 MQARYSVSSPNSLGVVPYLGGEQSYYRAAAAAAGGGYTAMP
10 20 30 40
60 70 80 90 100 110
pF1KE3 GPAPPYAAPSYGAPGPLLGAPGGLAGADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQS
.: :. :... :::.: :. . : . .:.::::: :::.::::.
CCDS44 APMSVYSHPAHAEQ-----YPGGMAR---AYGPYTPQPQPKDMVKPPYSYIALITMAIQN
50 60 70 80 90
120 130 140 150 160 170
pF1KE3 APLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWT
:: .:.::. :::.. ::::. .: :::::::::::::.:: :::::. ::::.:::
CCDS44 APDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWT
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 LDPNCEKMFDNGNFRRKRKRRAEASAAVRSGARS----VGGAEAPALEPPSAACLDLQAS
:::. .::.::.: : :.:: . . ::.. .. . :. .:: : . ...
CCDS44 LDPDSYNMFENGSFLR-RRRRFKKKDAVKDKEEKDRLHLKEPPPPGRQPPPAPPEQADGN
160 170 180 190 200 210
240 250 260 270
pF1KE3 -PSPSAP---------EAATCFSGFASAMSALAGGLGTF--------PGGLAGDFSFGRR
:.:. : : .:: : : : : :. : . ....: :
CCDS44 APGPQPPPVRIQDIKTENGTCPSPPQPLSPAAALGSGSAAAVPKIESPDSSSSSLSSGSS
220 230 240 250 260 270
280 290 300 310
pF1KE3 PP-TVATHAPQTLN--------PSPGFAPGHQTAAAGFRLSHLLYSREGTEV
:: .. . : .:. :.:. : :.. :: ..... : .:.
CCDS44 PPGSLPSARPLSLDGADSAPPPPAPSAPPPHHSQ--GFSVDNIMTSLRGSPQSAAAELSS
280 290 300 310 320 330
CCDS44 GLLASAAASSRAGIAPPLALGAYSPGQSSLYSSPCSQTSSAGSSGGGGGGAGAAGGAGGA
340 350 360 370 380 390
>>CCDS13147.1 FOXA2 gene_id:3170|Hs108|chr20 (457 aa)
initn: 457 init1: 435 opt: 548 Z-score: 406.6 bits: 84.0 E(32554): 2.5e-16
Smith-Waterman score: 553; 37.0% identity (59.3% similar) in 322 aa overlap (1-308:65-374)
10 20
pF1KE3 MATYCD-DLGPSSA--PPGQAQATAHPPGY
:..: ..:: : :: : : : :
CCDS13 LGMNGMNTYMSMSAAAMGSGSGNMSAGSMNMSSYVGAGMSPSLAGMSPG-AGAMAGMGG-
40 50 60 70 80 90
30 40 50 60 70 80
pF1KE3 EPGDLGAVGGGPLLWVNAPALSP-KSYASGP-GPAPPYAAPSYGAPGPLLGAPGGLAGAD
: :..: :: : .:.::: . :.: : ::: .... .:. : : . :
CCDS13 SAGAAGVAGMGPHL---SPSLSPLGGQAAGAMGGLAPYA--NMNSMSPMYGQAGLSRARD
100 110 120 130 140
90 100 110 120 130 140
pF1KE3 LAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAG
: . ..::::: .::.::::..: . ::::.:::.. ::::....
CCDS13 PKTYRRSYTH-----AKPPYSYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQR
150 160 170 180 190 200
150 160 170 180 190 200
pF1KE3 WQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKR-RAEASAA
:::::::.::.:::: ::::. : ::::..::: :. .::.:: . :..:: . : . :
CCDS13 WQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKQLA
210 220 230 240 250 260
210 220 230 240 250 260
pF1KE3 VRSGARSVG-GAEAPALEPPSAACLDLQASPSPSAPEAATCFSGFASAMSALA-GGLGTF
.. .: ..: : .: : : : : :.:. .: .. . :: . :::: .
CCDS13 LKEAAGAAGSGKKAAAGAQASQAQLGEAAGPASETPAGTESPHSSASPCQEHKRGGLGEL
270 280 290 300 310 320
270 280 290 300 310
pF1KE3 PGGLAGDFSFGRRPPTVATH---APQTLNPS--PGFAP-GHQTAAAGFRLSHLLYSREGT
: :. .: . :. . . : . :.: ::. : .: . ..:
CCDS13 KGTPAAALSPPEPAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLM
330 340 350 360 370 380
pF1KE3 EV
CCDS13 SSEQQHHHSHHHHQPHKMDLKAYEQVMHYPGYGSPMPGSLAMGPVTNKTGLDASPLAADT
390 400 410 420 430 440
>>CCDS46585.1 FOXA2 gene_id:3170|Hs108|chr20 (463 aa)
initn: 457 init1: 435 opt: 548 Z-score: 406.5 bits: 84.0 E(32554): 2.5e-16
Smith-Waterman score: 553; 37.0% identity (59.3% similar) in 322 aa overlap (1-308:71-380)
10 20
pF1KE3 MATYCD-DLGPSSA--PPGQAQATAHPPGY
:..: ..:: : :: : : : :
CCDS46 LGMNGMNTYMSMSAAAMGSGSGNMSAGSMNMSSYVGAGMSPSLAGMSPG-AGAMAGMGG-
50 60 70 80 90
30 40 50 60 70 80
pF1KE3 EPGDLGAVGGGPLLWVNAPALSP-KSYASGP-GPAPPYAAPSYGAPGPLLGAPGGLAGAD
: :..: :: : .:.::: . :.: : ::: .... .:. : : . :
CCDS46 SAGAAGVAGMGPHL---SPSLSPLGGQAAGAMGGLAPYA--NMNSMSPMYGQAGLSRARD
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE3 LAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAG
: . ..::::: .::.::::..: . ::::.:::.. ::::....
CCDS46 PKTYRRSYTH-----AKPPYSYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQR
160 170 180 190 200
150 160 170 180 190 200
pF1KE3 WQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKR-RAEASAA
:::::::.::.:::: ::::. : ::::..::: :. .::.:: . :..:: . : . :
CCDS46 WQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKQLA
210 220 230 240 250 260
210 220 230 240 250 260
pF1KE3 VRSGARSVG-GAEAPALEPPSAACLDLQASPSPSAPEAATCFSGFASAMSALA-GGLGTF
.. .: ..: : .: : : : : :.:. .: .. . :: . :::: .
CCDS46 LKEAAGAAGSGKKAAAGAQASQAQLGEAAGPASETPAGTESPHSSASPCQEHKRGGLGEL
270 280 290 300 310 320
270 280 290 300 310
pF1KE3 PGGLAGDFSFGRRPPTVATH---APQTLNPS--PGFAP-GHQTAAAGFRLSHLLYSREGT
: :. .: . :. . . : . :.: ::. : .: . ..:
CCDS46 KGTPAAALSPPEPAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLM
330 340 350 360 370 380
pF1KE3 EV
CCDS46 SSEQQHHHSHHHHQPHKMDLKAYEQVMHYPGYGSPMPGSLAMGPVTNKTGLDASPLAADT
390 400 410 420 430 440
>>CCDS624.1 FOXD3 gene_id:27022|Hs108|chr1 (478 aa)
initn: 505 init1: 465 opt: 531 Z-score: 394.2 bits: 81.7 E(32554): 1.2e-15
Smith-Waterman score: 555; 37.6% identity (59.5% similar) in 311 aa overlap (6-306:59-337)
10 20 30
pF1KE3 MATYCDDLGPSSAPPGQAQATAHPPGYEPGDLGAV
:.. :.. :: : . : : . ...
CCDS62 GEGDDGLEEKDSDAGCDSPAGPPELRLDEADEVPPAAPHHGQPQPPHQQPLTLPKEAAGA
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE3 GGGPLLWVNAPALSPKSYASGPGPAPPYAAPSYGAPGPLLGAPGGLAGADLAWLSLSGQQ
:.:: :.:: .. . : . .. : :.:: :. :::: . .
CCDS62 GAGPGGDVGAP----EADGCKGGVGGEEGGASGGGPGAGSGSAGGLAPS----------K
90 100 110 120 130
100 110 120 130 140 150
pF1KE3 ELLRLVRPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLS
::.::::: :::.::: ..: .::::: : ..... ::.:... .::::::::::
CCDS62 PKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS
140 150 160 170 180 190
160 170 180 190 200
pF1KE3 LNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKR---------RAEASAAVR
::::: :.::. .:::::::::::. : :::::.: :.::: : ... ..
CCDS62 LNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRHQQEHLREQTALMMQ
200 210 220 230 240 250
210 220 230 240 250 260
pF1KE3 S-GARSVGGAEAPALEPPSAACLDLQASPSPSAPEAATCFSGFASAMSALAGGLGTFPGG
: :: :...: . : : . :. :.: :: .: :.: .: :.. .: .
CCDS62 SFGAYSLAAAAGAA--GPYGRPYGLH----PAA--AAGAYSHPAAAAAAAAAAALQYPYA
260 270 280 290 300
270 280 290 300 310
pF1KE3 LAGDFSFGRRPPTVATHAPQTLNPSPGFAPGHQTAAAGFRLSHLLYSREGTEV
: :: :: : .. :. :...:: : .:
CCDS62 L---------PP-VAPVLPPAVPLLPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAG
310 320 330 340 350
CCDS62 TAGAAGTTASLIKSEPSARPSFSIENIIGGGPAAPGGSAVGAGVAGGTGGSGGGSTAQSF
360 370 380 390 400 410
318 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:31:17 2016 done: Tue Nov 8 04:31:17 2016
Total Scan time: 2.770 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]