FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3120, 299 aa
  1>>>pF1KE3120 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5841+/-0.000849; mu= 13.7172+/- 0.051
 mean_var=61.6378+/-12.724, 0's: 0 Z-trim(106.3): 10  B-trim: 402 in 1/51
 Lambda= 0.163362
 statistics sampled from 8876 (8881) to 8876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.273), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS33379.1 CNOT9 gene_id:9125|Hs108|chr2          ( 299) 1944 466.6  1e-131
CCDS63123.1 CNOT9 gene_id:9125|Hs108|chr2          ( 258) 1572 378.9 2.2e-105
CCDS63122.1 CNOT9 gene_id:9125|Hs108|chr2          ( 331) 1025 250.0 1.8e-66


>>CCDS33379.1 CNOT9 gene_id:9125|Hs108|chr2               (299 aa)
 initn: 1944 init1: 1944 opt: 1944  Z-score: 2478.2  bits: 466.6 E(32554): 1e-131
Smith-Waterman score: 1944; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KE3 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KE3 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
              250       260       270       280       290         

>>CCDS63123.1 CNOT9 gene_id:9125|Hs108|chr2               (258 aa)
 initn: 1572 init1: 1572 opt: 1572  Z-score: 2005.5  bits: 378.9 E(32554): 2.2e-105
Smith-Waterman score: 1572; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE3 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KE3 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
       ::::                                                       
CCDS63 DNPRFSDLTFCWSSFQRK                                         
              250                                                 

>>CCDS63122.1 CNOT9 gene_id:9125|Hs108|chr2               (331 aa)
 initn: 1025 init1: 1025 opt: 1025  Z-score: 1307.0  bits: 250.0 E(32554): 1.8e-66
Smith-Waterman score: 1870; 90.3% identity (90.3% similar) in 331 aa overlap (1-299:1-331)

               10        20        30        40        50        60
pF1KE3 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
               70        80        90       100       110       120

              130       140                                        
pF1KE3 PFLHTVSKTRPFEYLRLTSLGVI--------------------------------GALVK
       :::::::::::::::::::::::                                :::::
CCDS63 PFLHTVSKTRPFEYLRLTSLGVIVETGFHHVGQADLELPTSSDLPASASQSAGITGALVK
              130       140       150       160       170       180

      150       160       170       180       190       200        
pF1KE3 TDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSH
              190       200       210       220       230       240

      210       220       230       240       250       260        
pF1KE3 VAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKD
              250       260       270       280       290       300

      270       280       290         
pF1KE3 DTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
       :::::::::::::::::::::::::::::::
CCDS63 DTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
              310       320       330 




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:05:48 2016 done: Sun Nov  6 12:05:48 2016
 Total Scan time:  2.550 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]