FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3116, 291 aa
  1>>>pF1KE3116 291 - 291 aa - 291 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5573+/-0.000862; mu= 11.5484+/- 0.052
 mean_var=137.6285+/-27.179, 0's: 0 Z-trim(111.6): 18  B-trim: 248 in 1/52
 Lambda= 0.109325
 statistics sampled from 12515 (12530) to 12515 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.385), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS46392.1 ZC3H8 gene_id:84524|Hs108|chr2         ( 291) 2001 326.5 1.4e-89
CCDS46393.1 ZC3H6 gene_id:376940|Hs108|chr2        (1189)  840 144.0 5.2e-34
CCDS42582.1 ZC3H4 gene_id:23211|Hs108|chr19        (1303)  479 87.1 7.7e-17


>>CCDS46392.1 ZC3H8 gene_id:84524|Hs108|chr2              (291 aa)
 initn: 2001 init1: 2001 opt: 2001  Z-score: 1721.6  bits: 326.5 E(32554): 1.4e-89
Smith-Waterman score: 2001; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)

               10        20        30        40        50        60
pF1KE3 MDFENLFSKPPNPALGKTATDSDERIDDEIDTEVEETQEEKIKLECEQIPKKFRHSAISP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MDFENLFSKPPNPALGKTATDSDERIDDEIDTEVEETQEEKIKLECEQIPKKFRHSAISP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KSSLHRKSRSKDYDVYSDNDICSQESEDNFAKELQQYIQAREMANAAQPEESTKKEGVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KSSLHRKSRSKDYDVYSDNDICSQESEDNFAKELQQYIQAREMANAAQPEESTKKEGVKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 TPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QAFINQHTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QAFINQHTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENC
              190       200       210       220       230       240

              250       260       270       280       290 
pF1KE3 LYLHNEYPCKFYHTGTKCYQGEYCKFSHAPLTPETQELLAKVLDTEKKSCK
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LYLHNEYPCKFYHTGTKCYQGEYCKFSHAPLTPETQELLAKVLDTEKKSCK
              250       260       270       280       290 

>>CCDS46393.1 ZC3H6 gene_id:376940|Hs108|chr2             (1189 aa)
 initn: 887 init1: 744 opt: 840  Z-score: 724.0  bits: 144.0 E(32554): 5.2e-34
Smith-Waterman score: 869; 49.0% identity (72.4% similar) in 294 aa overlap (22-288:77-369)

                        10        20        30        40           
pF1KE3          MDFENLFSKPPNPALGKTATDSDERIDDEIDTEVEETQEEKIK----LECE
                                     ::.  :  .:..::.:.  . :     .  
CCDS46 RKSRKKHKKEREKKKSKRRKREKHKHNSPSSDDSSDYSLDSDVEHTESSHKKRTGFYRDY
         50        60        70        80        90       100      

        50            60         70           80                   
pF1KE3 QIPKKFR-H---SAISPKSSLH-RKSRSKDYD---VYSDNDICS----------QESEDN
       .::   : :   : :. :.. : .: .::.::   .:::... .          ::.:..
CCDS46 DIPFTQRGHISGSYITSKKGQHNKKFKSKEYDEYSTYSDDNFGNYSDDNFGNYGQETEED
        110       120       130       140       150       160      

      90       100           110       120       130       140     
pF1KE3 FAKELQQYIQAREMANAAQ----PEESTKKEGVKDTPQAAKQKNKNLKAGHKNGKQKKMK
       ::..:.:: ::.: .: :      .:: ::. .: . :. .:. :....:.  :  ::.:
CCDS46 FANQLKQYRQAKETSNIALGSSFSKESGKKQRMKGVQQGIEQRVKSFNVGRGRGLPKKIK
        170       180       190       200       210       220      

         150        160       170       180       190       200    
pF1KE3 RKWPGP-GNKGSNALLRNSGSQEEDGKPKEKQQHLSQAFINQHTVERKGKQICKYFLERK
       ::  :   ::: :..  ..  :: . :: .: . ..: ::::::::.::::::::::: .
CCDS46 RKERGGRTNKGPNVFSVSDDFQEYN-KPGKKWKVMTQEFINQHTVEHKGKQICKYFLEGR
        230       240       250        260       270       280     

          210       220       230       240       250       260    
pF1KE3 CIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEYPCKFYHTGTKCYQGEYC
       ::::::::::::::.::.::.::::.:::::.::::.:.:::.::::::.:.:::::. :
CCDS46 CIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNC
         290       300       310       320       330       340     

          270       280       290                                  
pF1KE3 KFSHAPLTPETQELLAKVLDTEKKSCK                                 
       ::::  :: ::..:: :::.:...                                    
CCDS46 KFSHDDLTKETKKLLDKVLNTDEELINEDERELEELRKRGITPLPKPPPGVGLLPTPPEH
         350       360       370       380       390       400     

>>CCDS42582.1 ZC3H4 gene_id:23211|Hs108|chr19             (1303 aa)
 initn: 566 init1: 435 opt: 479  Z-score: 415.8  bits: 87.1 E(32554): 7.7e-17
Smith-Waterman score: 479; 35.9% identity (68.0% similar) in 206 aa overlap (85-283:279-482)

           60        70        80        90       100       110    
pF1KE3 HSAISPKSSLHRKSRSKDYDVYSDNDICSQESEDNFAKELQQYIQAREMANAAQPEESTK
                                     :.:..: .: ..: ...:  .  . .: .:
CCDS42 GRGSRGGSRGRGMGRGSRGRGRGSMGGDHPEDEEDFYEEEMDYGESEEPMGDDDYDEYSK
      250       260       270       280       290       300        

          120       130       140       150       160       170    
pF1KE3 KEGVKDTPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKE
       .  ...  ..  .....:. :.  :.. . :    : :  :: . . ..: ....    :
CCDS42 E--LNQYRRSKDSRGRGLSRGRGRGSRGRGKGMGRGRGRGGSRGGMNKGGMNDDEDFYDE
        310       320       330       340       350       360      

                180        190       200       210       220       
pF1KE3 KQ------QHLSQAFINQHT-VERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCK
        .      .. :.   . :   ..::: :::::.: .:  ::.:.:.:: :. ::.:.::
CCDS42 DMGDGGGGSYRSRDHDKPHQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCK
        370       380       390       400       410       420      

       230       240       250       260       270       280       
pF1KE3 FYVQGYCTRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSHAPLTPETQELLAKVLDTEK
       ::. :.:.:.::: :.:...:::.:::  .: .:. : ::: ::: ::.::: :.:    
CCDS42 FYITGFCARAENCPYMHGDFPCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDA
        430       440       450       460       470       480      

       290                                                         
pF1KE3 KSCK                                                        
                                                                   
CCDS42 EAGAEDEKEVEELKKQGINPLPKPPPGVGLLPTPPRPPGPQAPTSPNGRPMQGGPPPPPP
        490       500       510       520       530       540      




291 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:32:09 2016 done: Sun Nov  6 10:32:10 2016
 Total Scan time:  2.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]