FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3106, 276 aa
  1>>>pF1KE3106 276 - 276 aa - 276 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0956+/-0.000804; mu= -3.4021+/- 0.049
 mean_var=319.2664+/-64.779, 0's: 0 Z-trim(118.7): 2  B-trim: 0 in 0/54
 Lambda= 0.071779
 statistics sampled from 19697 (19699) to 19697 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.847), E-opt: 0.2 (0.605), width:  16
 Scan time:  3.300

The best scores are:                                      opt bits E(32554)
CCDS59410.1 AKT1S1 gene_id:84335|Hs108|chr19       ( 276) 1892 208.2 5.3e-54
CCDS12784.1 AKT1S1 gene_id:84335|Hs108|chr19       ( 256) 1759 194.4 7.1e-50


>>CCDS59410.1 AKT1S1 gene_id:84335|Hs108|chr19            (276 aa)
 initn: 1892 init1: 1892 opt: 1892  Z-score: 1082.9  bits: 208.2 E(32554): 5.3e-54
Smith-Waterman score: 1892; 100.0% identity (100.0% similar) in 276 aa overlap (1-276:1-276)

               10        20        30        40        50        60
pF1KE3 MSFEGGDGAGPAMLATGTARMASGRPEELWEAVVGAAERFRARTGTELVLLTAAPPPPPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MSFEGGDGAGPAMLATGTARMASGRPEELWEAVVGAAERFRARTGTELVLLTAAPPPPPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PGPCAYAAHGRGALAEAARRCLHDIALAHRAATAARPPAPPPAPQPPSPTPSPPRPTLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PGPCAYAAHGRGALAEAARRCLHDIALAHRAATAARPPAPPPAPQPPSPTPSPPRPTLAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EDNEEDEDEPTETETSGEQLGISDNGGLFVMDEDATLQDLPPFCESDPESTDDGSLSEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EDNEEDEDEPTETETSGEQLGISDNGGLFVMDEDATLQDLPPFCESDPESTDDGSLSEET
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PAGPPTCSVPPASALPTQQYAKSLPVSVPVWGFKEKRTEARSSDEENGPPSSPDLDRIAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PAGPPTCSVPPASALPTQQYAKSLPVSVPVWGFKEKRTEARSSDEENGPPSSPDLDRIAA
              190       200       210       220       230       240

              250       260       270      
pF1KE3 SMRALVLREAEDTQVFGDLPRPRLNTSDFQKLKRKY
       ::::::::::::::::::::::::::::::::::::
CCDS59 SMRALVLREAEDTQVFGDLPRPRLNTSDFQKLKRKY
              250       260       270      

>>CCDS12784.1 AKT1S1 gene_id:84335|Hs108|chr19            (256 aa)
 initn: 1759 init1: 1759 opt: 1759  Z-score: 1008.9  bits: 194.4 E(32554): 7.1e-50
Smith-Waterman score: 1759; 100.0% identity (100.0% similar) in 256 aa overlap (21-276:1-256)

               10        20        30        40        50        60
pF1KE3 MSFEGGDGAGPAMLATGTARMASGRPEELWEAVVGAAERFRARTGTELVLLTAAPPPPPR
                           ::::::::::::::::::::::::::::::::::::::::
CCDS12                     MASGRPEELWEAVVGAAERFRARTGTELVLLTAAPPPPPR
                                   10        20        30        40

               70        80        90       100       110       120
pF1KE3 PGPCAYAAHGRGALAEAARRCLHDIALAHRAATAARPPAPPPAPQPPSPTPSPPRPTLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGPCAYAAHGRGALAEAARRCLHDIALAHRAATAARPPAPPPAPQPPSPTPSPPRPTLAR
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KE3 EDNEEDEDEPTETETSGEQLGISDNGGLFVMDEDATLQDLPPFCESDPESTDDGSLSEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EDNEEDEDEPTETETSGEQLGISDNGGLFVMDEDATLQDLPPFCESDPESTDDGSLSEET
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KE3 PAGPPTCSVPPASALPTQQYAKSLPVSVPVWGFKEKRTEARSSDEENGPPSSPDLDRIAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PAGPPTCSVPPASALPTQQYAKSLPVSVPVWGFKEKRTEARSSDEENGPPSSPDLDRIAA
              170       180       190       200       210       220

              250       260       270      
pF1KE3 SMRALVLREAEDTQVFGDLPRPRLNTSDFQKLKRKY
       ::::::::::::::::::::::::::::::::::::
CCDS12 SMRALVLREAEDTQVFGDLPRPRLNTSDFQKLKRKY
              230       240       250      




276 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:24:18 2016 done: Mon Nov  7 03:24:18 2016
 Total Scan time:  3.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]