FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3104, 275 aa
  1>>>pF1KE3104 275 - 275 aa - 275 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0247+/-0.00102; mu= 7.6967+/- 0.061
 mean_var=133.7066+/-28.148, 0's: 0 Z-trim(109.0): 40  B-trim: 0 in 0/51
 Lambda= 0.110917
 statistics sampled from 10581 (10616) to 10581 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.326), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS5129.1 RNF217 gene_id:154214|Hs108|chr6        ( 275) 1967 325.9   2e-89
CCDS69191.1 RNF217 gene_id:154214|Hs108|chr6       ( 542) 1625 271.4   1e-72


>>CCDS5129.1 RNF217 gene_id:154214|Hs108|chr6             (275 aa)
 initn: 1967 init1: 1967 opt: 1967  Z-score: 1719.1  bits: 325.9 E(32554): 2e-89
Smith-Waterman score: 1967; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)

               10        20        30        40        50        60
pF1KE3 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 TTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 IEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQLRFFGDHTSNLSIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 IEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQLRFFGDHTSNLSIF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GCKYRYLPERPHLRRLVRGSVCAGKLFIAPLIMVLGLALGAIAVVIVEEIKTYWNLISGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 GCKYRYLPERPHLRRLVRGSVCAGKLFIAPLIMVLGLALGAIAVVIVEEIKTYWNLISGR
              190       200       210       220       230       240

              250       260       270     
pF1KE3 TRNQTQHLAPQPVLLSDMLYCLKQVFICISYLLPL
       :::::::::::::::::::::::::::::::::::
CCDS51 TRNQTQHLAPQPVLLSDMLYCLKQVFICISYLLPL
              250       260       270     

>>CCDS69191.1 RNF217 gene_id:154214|Hs108|chr6            (542 aa)
 initn: 1625 init1: 1625 opt: 1625  Z-score: 1419.2  bits: 271.4 E(32554): 1e-72
Smith-Waterman score: 1625; 99.6% identity (100.0% similar) in 225 aa overlap (2-226:294-518)

                                            10        20        30 
pF1KE3                              MKVQLGQVEIKCPITECFEFLEETTVVYNLT
                                     .:::::::::::::::::::::::::::::
CCDS69 RVCLEDKPIKPLPCCKKAVCEECLKVYLSAQVQLGQVEIKCPITECFEFLEETTVVYNLT
           270       280       290       300       310       320   

              40        50        60        70        80        90 
pF1KE3 HEDSIKYKYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 HEDSIKYKYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWC
           330       340       350       360       370       380   

             100       110       120       130       140       150 
pF1KE3 FKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 FKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQ
           390       400       410       420       430       440   

             160       170       180       190       200       210 
pF1KE3 CNTNFCYRCGERYRQLRFFGDHTSNLSIFGCKYRYLPERPHLRRLVRGSVCAGKLFIAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 CNTNFCYRCGERYRQLRFFGDHTSNLSIFGCKYRYLPERPHLRRLVRGSVCAGKLFIAPL
           450       460       470       480       490       500   

             220       230       240       250       260       270 
pF1KE3 IMVLGLALGAIAVVIVEEIKTYWNLISGRTRNQTQHLAPQPVLLSDMLYCLKQVFICISY
       :::::::::::::::                                             
CCDS69 IMVLGLALGAIAVVIGLFVFPIYCLCKKQRKRSRTGMHW                     
           510       520       530       540                       




275 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:52:25 2016 done: Sat Nov  5 22:52:25 2016
 Total Scan time:  2.110 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]