FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3093, 262 aa
  1>>>pF1KE3093 262 - 262 aa - 262 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2933+/-0.000652; mu= 15.2768+/- 0.039
 mean_var=66.6600+/-13.330, 0's: 0 Z-trim(111.0): 7  B-trim: 14 in 1/51
 Lambda= 0.157088
 statistics sampled from 12045 (12049) to 12045 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.37), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS7349.1 COMTD1 gene_id:118881|Hs108|chr10       ( 262) 1743 403.2 9.4e-113


>>CCDS7349.1 COMTD1 gene_id:118881|Hs108|chr10            (262 aa)
 initn: 1743 init1: 1743 opt: 1743  Z-score: 2137.8  bits: 403.2 E(32554): 9.4e-113
Smith-Waterman score: 1743; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)

               10        20        30        40        50        60
pF1KE3 MTQPVPRLSVPAALALGSAALGAAFATGLFLGRRCPPWRGRREQCLLPPEDSRLWQYLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MTQPVPRLSVPAALALGSAALGAAFATGLFLGRRCPPWRGRREQCLLPPEDSRLWQYLLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 VAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIR
              190       200       210       220       230       240

              250       260  
pF1KE3 RDVRVYISLLPLGDGLTLAFKI
       ::::::::::::::::::::::
CCDS73 RDVRVYISLLPLGDGLTLAFKI
              250       260  




262 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:25:05 2016 done: Sun Nov  6 15:25:05 2016
 Total Scan time:  2.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]