Result of FASTA (ccds) for
pFN21AE3090
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3090, 260 aa
1>>>pF1KE3090 260 - 260 aa - 260 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1999+/-0.000838; mu= 15.3488+/- 0.051
mean_var=65.4458+/-13.016, 0's: 0 Z-trim(106.4): 19 B-trim: 3 in 1/51
Lambda= 0.158538
statistics sampled from 8977 (8988) to 8977 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.276), width: 16
Scan time: 2.130
The best scores are: opt bits E(32554)
CCDS3548.1 DCK gene_id:1633|Hs108|chr4 ( 260) 1761 411.4 3.2e-115
CCDS1931.1 DGUOK gene_id:1716|Hs108|chr2 ( 277) 846 202.1 3.3e-52
CCDS1932.1 DGUOK gene_id:1716|Hs108|chr2 ( 189) 390 97.7 6.1e-21
CCDS61955.1 TK2 gene_id:7084|Hs108|chr16 ( 168) 321 81.9 3.1e-16
CCDS54018.1 TK2 gene_id:7084|Hs108|chr16 ( 234) 321 82.0 4.1e-16
CCDS54016.1 TK2 gene_id:7084|Hs108|chr16 ( 240) 321 82.0 4.2e-16
CCDS54017.1 TK2 gene_id:7084|Hs108|chr16 ( 247) 321 82.0 4.3e-16
CCDS10805.2 TK2 gene_id:7084|Hs108|chr16 ( 265) 321 82.0 4.5e-16
>>CCDS3548.1 DCK gene_id:1633|Hs108|chr4 (260 aa)
initn: 1761 init1: 1761 opt: 1761 Z-score: 2182.1 bits: 411.4 E(32554): 3.2e-115
Smith-Waterman score: 1761; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)
10 20 30 40 50 60
pF1KE3 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE
190 200 210 220 230 240
250 260
pF1KE3 DFKDKYESLVEKVKEFLSTL
::::::::::::::::::::
CCDS35 DFKDKYESLVEKVKEFLSTL
250 260
>>CCDS1931.1 DGUOK gene_id:1716|Hs108|chr2 (277 aa)
initn: 835 init1: 671 opt: 846 Z-score: 1050.7 bits: 202.1 E(32554): 3.3e-52
Smith-Waterman score: 846; 47.5% identity (77.9% similar) in 263 aa overlap (1-260:18-277)
10 20 30 40
pF1KE3 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQ
:: : .. : . : ...:::::::.::::::..: .
CCDS19 MAAGRLFLSRLRAPFSSMAKSPLEGVSSSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 LCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLS
.:.:. :::: : :.:.. . . . .. ::.:.:::..: :::.::::.. ::
CCDS19 TYPEWHVATEPVATWQNIQAAGT---QKACTAQSLGNLLDMMYREPARWSYTFQTFSFLS
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 RIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMN
:...:: . :: .:.::: .:::::::::::::.::.:. ... :: ::::::...
CCDS19 RLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLL
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 NQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKT
.:.. . : :.:::::.:..::.:.: :.:.::.:: : :::.:: .::.::.:.: :
CCDS19 WEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKL
180 190 200 210 220 230
230 240 250 260
pF1KE3 NFDYLQEVPILTLDVNEDFKD---KYESLVEKVKEFLSTL
.:. :...:.:.::::.::.. : :.:...:. :...:
CCDS19 HFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFVKNL
240 250 260 270
>>CCDS1932.1 DGUOK gene_id:1716|Hs108|chr2 (189 aa)
initn: 427 init1: 231 opt: 390 Z-score: 489.5 bits: 97.7 E(32554): 6.1e-21
Smith-Waterman score: 390; 46.0% identity (71.5% similar) in 137 aa overlap (1-137:18-151)
10 20 30 40
pF1KE3 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQ
:: : .. : . : ...:::::::.::::::..: .
CCDS19 MAAGRLFLSRLRAPFSSMAKSPLEGVSSSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 LCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLS
.:.:. :::: : :.:.. . . . .. ::.:.:::..: :::.::::.. ::
CCDS19 TYPEWHVATEPVATWQNIQAAG---TQKACTAQSLGNLLDMMYREPARWSYTFQTFSFLS
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 RIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMN
:...:: . :: .:.::: .::::::::: :
CCDS19 RLKVQLEPFPEKLLQARKPVQIFERSVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQED
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 NQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKT
CCDS19 LMREVNTFVKNL
180
>>CCDS61955.1 TK2 gene_id:7084|Hs108|chr16 (168 aa)
initn: 351 init1: 169 opt: 321 Z-score: 404.9 bits: 81.9 E(32554): 3.1e-16
Smith-Waterman score: 358; 35.4% identity (68.0% similar) in 175 aa overlap (85-259:1-160)
60 70 80 90 100 110
pF1KE3 VARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNG
::. ::..:.:::. ::. :.
CCDS61 MYHDASRWGLTLQTYV-------QLTMLDR
10 20
120 130 140 150 160 170
pF1KE3 KLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDG
. . . : ..:::..: ::::. :::.: : :..... ..: ::. .. :..:
CCDS61 HTRPQVSSVRLMERSIHSARYIFVENLYRSGKMPEVDYVVLSEWFDWILRNMDVSVDL--
30 40 50 60 70 80
180 190 200 210 220 230
pF1KE3 IIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPIL
:.::...:::: .:. : :.::. ::::::: .:. :: ::.. .: . . .:.:
CCDS61 IVYLRTNPETCYQRLKKRCREEEKVIPLEYLEAIHHLHEEWLIKGSL-----FPMAAPVL
90 100 110 120 130
240 250 260
pF1KE3 TLDVNEDFKDKYESLVEKVKEFLSTL
...... .. : : :. .. . :
CCDS61 VIEADHHMERMLE-LFEQNRDRILTPENRKHCP
140 150 160
>>CCDS54018.1 TK2 gene_id:7084|Hs108|chr16 (234 aa)
initn: 454 init1: 169 opt: 321 Z-score: 402.8 bits: 82.0 E(32554): 4.1e-16
Smith-Waterman score: 459; 34.8% identity (64.4% similar) in 253 aa overlap (9-259:5-226)
10 20 30 40 50
pF1KE3 MATPPKRSCPSFSASSEGTRIKK--ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARW
: :...: . :: : .:::::.::.: ...... : ::. :::..:
CCDS54 MGAFCQRPSSDKEQEKEKKSVICVEGNIASGKTTCLEFFSN-ATDVEVLTEPVSKW
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 CNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKD
::. : : : .::. ::..:.:::. ::. :. . .
CCDS54 RNVR---------------GHNPLGLMYHDASRWGLTLQTYV-------QLTMLDRHTRP
60 70 80 90
120 130 140 150 160 170
pF1KE3 AEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYL
. : ..:::..: ::::. :::.: : :..... ..: ::. .. :..: :.::
CCDS54 QVSSVRLMERSIHSARYIFVENLYRSGKMPEVDYVVLSEWFDWILRNMDVSVDL--IVYL
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 QATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDV
...:::: .:. : :.::. ::::::: .:. :: ::.. .: . . .:.:....
CCDS54 RTNPETCYQRLKKRCREEEKVIPLEYLEAIHHLHEEWLIKGSL-----FPMAAPVLVIEA
160 170 180 190 200
240 250 260
pF1KE3 NEDFKDKYESLVEKVKEFLSTL
.. .. : : :. .. . :
CCDS54 DHHMERMLE-LFEQNRDRILTPENRKHCP
210 220 230
>>CCDS54016.1 TK2 gene_id:7084|Hs108|chr16 (240 aa)
initn: 386 init1: 169 opt: 321 Z-score: 402.6 bits: 82.0 E(32554): 4.2e-16
Smith-Waterman score: 388; 34.3% identity (63.8% similar) in 210 aa overlap (50-259:53-232)
20 30 40 50 60 70
pF1KE3 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG
:. :::..: ::. :
CCDS54 GSPASGPGPRRVQRRAWPPDKEQEKEKKSVVLTEPVSKWRNVR---------------GH
30 40 50 60
80 90 100 110 120 130
pF1KE3 NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS
: : .::. ::..:.:::. ::. :. . . . : ..:::..: ::::.
CCDS54 NPLGLMYHDASRWGLTLQTYV-------QLTMLDRHTRPQVSSVRLMERSIHSARYIFVE
70 80 90 100 110 120
140 150 160 170 180 190
pF1KE3 NLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQG
:::.: : :..... ..: ::. .. :..: :.::...:::: .:. : :.::.
CCDS54 NLYRSGKMPEVDYVVLSEWFDWILRNMDVSVDL--IVYLRTNPETCYQRLKKRCREEEKV
130 140 150 160 170
200 210 220 230 240 250
pF1KE3 IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLST
::::::: .:. :: ::.. .: . . .:.:...... .. : : :. .. . :
CCDS54 IPLEYLEAIHHLHEEWLIKGSL-----FPMAAPVLVIEADHHMERMLE-LFEQNRDRILT
180 190 200 210 220 230
260
pF1KE3 L
CCDS54 PENRKHCP
240
>>CCDS54017.1 TK2 gene_id:7084|Hs108|chr16 (247 aa)
initn: 408 init1: 169 opt: 321 Z-score: 402.4 bits: 82.0 E(32554): 4.3e-16
Smith-Waterman score: 368; 35.0% identity (67.8% similar) in 183 aa overlap (77-259:72-239)
50 60 70 80 90 100
pF1KE3 DWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIR
:. .: .::. ::..:.:::.
CCDS54 DKEQEKEKKSVICVEGNIASGKTTCLEFFSNATDVEGLMYHDASRWGLTLQTYV------
50 60 70 80 90
110 120 130 140 150 160
pF1KE3 AQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQF
::. :. . . . : ..:::..: ::::. :::.: : :..... ..: ::. ..
CCDS54 -QLTMLDRHTRPQVSSVRLMERSIHSARYIFVENLYRSGKMPEVDYVVLSEWFDWILRNM
100 110 120 130 140 150
170 180 190 200 210 220
pF1KE3 GQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFD
:..: :.::...:::: .:. : :.::. ::::::: .:. :: ::.. .:
CCDS54 DVSVDL--IVYLRTNPETCYQRLKKRCREEEKVIPLEYLEAIHHLHEEWLIKGSL-----
160 170 180 190 200
230 240 250 260
pF1KE3 YLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
. . .:.:...... .. : : :. .. . :
CCDS54 FPMAAPVLVIEADHHMERMLE-LFEQNRDRILTPENRKHCP
210 220 230 240
>>CCDS10805.2 TK2 gene_id:7084|Hs108|chr16 (265 aa)
initn: 436 init1: 169 opt: 321 Z-score: 402.0 bits: 82.0 E(32554): 4.5e-16
Smith-Waterman score: 447; 33.9% identity (64.2% similar) in 254 aa overlap (6-259:36-257)
10 20 30
pF1KE3 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKS
.:. : . .: . . : .:::::.::.
CCDS10 LRGWAARALRCFGPGSRGSPASGPGPRRVQRRAWPP-DKEQEKEKKSVICVEGNIASGKT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 TFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFT
: ...... : ::. :::..: ::. : : : .::. ::..:
CCDS10 TCLEFFSN-ATDVEVLTEPVSKWRNVR---------------GHNPLGLMYHDASRWGLT
70 80 90 100
100 110 120 130 140 150
pF1KE3 FQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIY
.:::. ::. :. . . . : ..:::..: ::::. :::.: : :.....
CCDS10 LQTYV-------QLTMLDRHTRPQVSSVRLMERSIHSARYIFVENLYRSGKMPEVDYVVL
110 120 130 140 150 160
160 170 180 190 200 210
pF1KE3 QDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESW
..: ::. .. :..: :.::...:::: .:. : :.::. ::::::: .:. :: :
CCDS10 SEWFDWILRNMDVSVDL--IVYLRTNPETCYQRLKKRCREEEKVIPLEYLEAIHHLHEEW
170 180 190 200 210
220 230 240 250 260
pF1KE3 LLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
:.. .: . . .:.:...... .. : : :. .. . :
CCDS10 LIKGSL-----FPMAAPVLVIEADHHMERMLE-LFEQNRDRILTPENRKHCP
220 230 240 250 260
260 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:14:02 2016 done: Sun Nov 6 05:14:03 2016
Total Scan time: 2.130 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]