FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3089, 257 aa
  1>>>pF1KE3089 257 - 257 aa - 257 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6013+/-0.00066; mu= 13.8258+/- 0.040
 mean_var=76.0016+/-15.033, 0's: 0 Z-trim(111.8): 4  B-trim: 180 in 1/51
 Lambda= 0.147117
 statistics sampled from 12628 (12632) to 12628 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.388), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS34170.1 RGS7BP gene_id:401190|Hs108|chr5       ( 257) 1727 375.2 2.4e-104


>>CCDS34170.1 RGS7BP gene_id:401190|Hs108|chr5            (257 aa)
 initn: 1727 init1: 1727 opt: 1727  Z-score: 1986.9  bits: 375.2 E(32554): 2.4e-104
Smith-Waterman score: 1727; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)

               10        20        30        40        50        60
pF1KE3 MSSAPNGRKKRPSRSTRSSIFQISKPPLQSGDWERRGSGSESAHKTQRALDDCKMLVQEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSSAPNGRKKRPSRSTRSSIFQISKPPLQSGDWERRGSGSESAHKTQRALDDCKMLVQEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 NTQVALYRELVISIGDVSVSCPSLRAEMHKTRTKGCEMARQAHQKLAAISGPEDGEIHPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NTQVALYRELVISIGDVSVSCPSLRAEMHKTRTKGCEMARQAHQKLAAISGPEDGEIHPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ICRLYIQLQCCLEMYTTEMLKSICLLGSLQFHRKGKEPGGGTKSLDCKIEESAETPALED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ICRLYIQLQCCLEMYTTEMLKSICLLGSLQFHRKGKEPGGGTKSLDCKIEESAETPALED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SSSSPVDSQQHSWQVSTDIENTERDMREMKNLLSKLRETMPLPLKNQDDSSLLNLTPYPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SSSSPVDSQQHSWQVSTDIENTERDMREMKNLLSKLRETMPLPLKNQDDSSLLNLTPYPL
              190       200       210       220       230       240

              250       
pF1KE3 VRRRKRRFFGLCCLISS
       :::::::::::::::::
CCDS34 VRRRKRRFFGLCCLISS
              250       




257 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:26:03 2016 done: Sun Nov  6 04:26:04 2016
 Total Scan time:  2.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]