Result of FASTA (ccds) for
pFN21AE3088
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3088, 215 aa
1>>>pF1KE3088 215 - 215 aa - 215 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4345+/-0.00119; mu= -4.8162+/- 0.070
mean_var=215.8250+/-44.520, 0's: 0 Z-trim(108.1): 28 B-trim: 66 in 1/52
Lambda= 0.087302
statistics sampled from 9993 (10004) to 9993 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.307), width: 16
Scan time: 2.200
The best scores are: opt bits E(32554)
CCDS53767.1 FGFR1OP2 gene_id:26127|Hs108|chr12 ( 215) 1337 180.7 6.3e-46
CCDS53766.1 FGFR1OP2 gene_id:26127|Hs108|chr12 ( 172) 831 116.9 8e-27
CCDS8709.1 FGFR1OP2 gene_id:26127|Hs108|chr12 ( 253) 831 117.0 1.1e-26
CCDS878.1 SIKE1 gene_id:80143|Hs108|chr1 ( 207) 667 96.3 1.5e-20
CCDS41371.1 SIKE1 gene_id:80143|Hs108|chr1 ( 211) 654 94.6 4.8e-20
>>CCDS53767.1 FGFR1OP2 gene_id:26127|Hs108|chr12 (215 aa)
initn: 1337 init1: 1337 opt: 1337 Z-score: 938.1 bits: 180.7 E(32554): 6.3e-46
Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KE3 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREIL
130 140 150 160 170 180
190 200 210
pF1KE3 QITRESFLNLRKDDASESTSLSALVTNSDLSLRKS
:::::::::::::::::::::::::::::::::::
CCDS53 QITRESFLNLRKDDASESTSLSALVTNSDLSLRKS
190 200 210
>>CCDS53766.1 FGFR1OP2 gene_id:26127|Hs108|chr12 (172 aa)
initn: 828 init1: 828 opt: 831 Z-score: 595.1 bits: 116.9 E(32554): 8e-27
Smith-Waterman score: 831; 95.0% identity (97.9% similar) in 140 aa overlap (1-140:1-140)
10 20 30 40 50 60
pF1KE3 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREIL
:::::::::::: ..: ..
CCDS53 GIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNVH
130 140 150 160 170
>>CCDS8709.1 FGFR1OP2 gene_id:26127|Hs108|chr12 (253 aa)
initn: 828 init1: 828 opt: 831 Z-score: 592.6 bits: 117.0 E(32554): 1.1e-26
Smith-Waterman score: 1218; 84.6% identity (84.6% similar) in 247 aa overlap (1-209:1-247)
10 20 30 40 50 60
pF1KE3 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 PRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDP
70 80 90 100 110 120
130 140
pF1KE3 GIIMKLKEQHSK--------------------------------------ELQAHVDQIT
:::::::::::: ::::::::::
CCDS87 GIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQIT
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE3 EMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 EMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLS
190 200 210 220 230 240
210
pF1KE3 ALVTNSDLSLRKS
:::::::
CCDS87 ALVTNSDLSLRKS
250
>>CCDS878.1 SIKE1 gene_id:80143|Hs108|chr1 (207 aa)
initn: 740 init1: 441 opt: 667 Z-score: 482.3 bits: 96.3 E(32554): 1.5e-20
Smith-Waterman score: 667; 51.4% identity (81.2% similar) in 208 aa overlap (1-200:1-203)
10 20 30 40 50
pF1KE3 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE
::::::: :.:::.:.::::.:: :::::..:..::..:: ::. ::::. ..
CCDS87 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL
........:. : .::: :::.:::::.:: ::::::.::::::::::.::..:.
CCDS87 MKDMSKYKPHILL----SQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLM
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 MASKKDDPGIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQE
.:.: : ..: ...:: :.....:.: ::. :::::...:..: :: ::.. ::: :
CCDS87 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELE
120 130 140 150 160 170
180 190 200 210
pF1KE3 NKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS
:: :::.:.:. :: :. ::... ...:
CCDS87 NKELRELLSISSES-LQARKENSMDTASQAIK
180 190 200
>>CCDS41371.1 SIKE1 gene_id:80143|Hs108|chr1 (211 aa)
initn: 690 init1: 441 opt: 654 Z-score: 473.3 bits: 94.6 E(32554): 4.8e-20
Smith-Waterman score: 654; 50.0% identity (79.7% similar) in 212 aa overlap (1-200:1-207)
10 20 30 40
pF1KE3 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQ------------YQE
::::::: :.:::.:.::::.:: :::::..:..::..:: ::.. :::
CCDS41 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQVRQRYQE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 EIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQM
. ..........:. : .::: :::.:::::.:: ::::::.::::::::::.::
CCDS41 DASDMKDMSKYKPHILL----SQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQM
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 FRLLMASKKDDPGIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQ
..:..:.: : ..: ...:: :.....:.: ::. :::::...:..: :: ::.. :
CCDS41 LQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQ
120 130 140 150 160 170
170 180 190 200 210
pF1KE3 LEQENKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS
:: ::: :::.:.:. :: :. ::... ...:
CCDS41 LELENKELRELLSISSES-LQARKENSMDTASQAIK
180 190 200 210
215 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:14:31 2016 done: Sun Nov 6 05:14:32 2016
Total Scan time: 2.200 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]