FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3084, 248 aa
  1>>>pF1KE3084 248 - 248 aa - 248 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1909+/-0.000717; mu= 16.0833+/- 0.043
 mean_var=76.8393+/-15.246, 0's: 0 Z-trim(110.6): 20  B-trim: 57 in 1/49
 Lambda= 0.146313
 statistics sampled from 11723 (11726) to 11723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.36), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS11808.1 SECTM1 gene_id:6398|Hs108|chr17        ( 248) 1697 367.0 6.7e-102


>>CCDS11808.1 SECTM1 gene_id:6398|Hs108|chr17             (248 aa)
 initn: 1697 init1: 1697 opt: 1697  Z-score: 1942.9  bits: 367.0 E(32554): 6.7e-102
Smith-Waterman score: 1697; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KE3 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP
              190       200       210       220       230       240

               
pF1KE3 LFPYAADP
       ::::::::
CCDS11 LFPYAADP
               




248 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:11:31 2016 done: Sun Nov  6 03:11:31 2016
 Total Scan time:  2.330 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]