FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3083, 244 aa
  1>>>pF1KE3083 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6139+/-0.000565; mu= 18.3866+/- 0.034
 mean_var=58.7754+/-11.445, 0's: 0 Z-trim(112.2): 24  B-trim: 0 in 0/52
 Lambda= 0.167293
 statistics sampled from 13008 (13026) to 13008 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.4), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS8887.2 METTL7B gene_id:196410|Hs108|chr12      ( 244) 1720 422.6 1.2e-118
CCDS8804.1 METTL7A gene_id:25840|Hs108|chr12       ( 244) 1057 262.6 1.8e-70


>>CCDS8887.2 METTL7B gene_id:196410|Hs108|chr12           (244 aa)
 initn: 1720 init1: 1720 opt: 1720  Z-score: 2243.6  bits: 422.6 E(32554): 1.2e-118
Smith-Waterman score: 1720; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE3 MDILVPLLQLLVLLLTLPLHLMALLGCWQPLCKSYFPYLMAVLTPKSNRKMESKKRELFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MDILVPLLQLLVLLLTLPLHLMALLGCWQPLCKSYFPYLMAVLTPKSNRKMESKKRELFS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QIKGLTGASGKVALLELGCGTGANFQFYPPGCRVTCLDPNPHFEKFLTKSMAENRHLQYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 QIKGLTGASGKVALLELGCGTGANFQFYPPGCRVTCLDPNPHFEKFLTKSMAENRHLQYE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 RFVVAPGEDMRQLADGSMDVVVCTLVLCSVQSPRKVLQEVRRVLRPGGVLFFWEHVAEPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 RFVVAPGEDMRQLADGSMDVVVCTLVLCSVQSPRKVLQEVRRVLRPGGVLFFWEHVAEPY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GSWAFMWQQVFEPTWKHIGDGCCLTRETWKDLENAQFSEIQMERQPPPLKWLPVGPHIMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GSWAFMWQQVFEPTWKHIGDGCCLTRETWKDLENAQFSEIQMERQPPPLKWLPVGPHIMG
              190       200       210       220       230       240

           
pF1KE3 KAVK
       ::::
CCDS88 KAVK
           

>>CCDS8804.1 METTL7A gene_id:25840|Hs108|chr12            (244 aa)
 initn: 1057 init1: 1057 opt: 1057  Z-score: 1378.8  bits: 262.6 E(32554): 1.8e-70
Smith-Waterman score: 1057; 58.6% identity (85.7% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE3 MDILVPLLQLLVLLLTLPLHLMALLGCWQPLCKSYFPYLMAVLTPKSNRKMESKKRELFS
       :.. . .:.: . .::.::.:. .:: :. .::..:::... .:   :..: ::::::::
CCDS88 MELTIFILRLAIYILTFPLYLLNFLGLWSWICKKWFPYFLVRFTVIYNEQMASKKRELFS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QIKGLTGASGKVALLELGCGTGANFQFYPPGCRVTCLDPNPHFEKFLTKSMAENRHLQYE
       ... ..: :::..:::.::::::::.::::::::::.::::.::::: ::.:::::::.:
CCDS88 NLQEFAGPSGKLSLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLIKSIAENRHLQFE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 RFVVAPGEDMRQLADGSMDVVVCTLVLCSVQSPRKVLQEVRRVLRPGGVLFFWEHVAEPY
       ::::: ::.:.:.::::.::::::::::::.. ...:.:: :::::::...: ::::   
CCDS88 RFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRVLRPGGAFYFMEHVAAEC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GSWAFMWQQVFEPTWKHIGDGCCLTRETWKDLENAQFSEIQMERQPPPLKWLPVGPHIMG
       ..: ..::::..:.:. . ::: ::::.:: :: :.::......   ::.:  : :::.:
CCDS88 STWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSKLKLQHIQAPLSWELVRPHIYG
              190       200       210       220       230       240

           
pF1KE3 KAVK
        :::
CCDS88 YAVK
           




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:12:01 2016 done: Sun Nov  6 03:12:02 2016
 Total Scan time:  2.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]