FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3082, 243 aa
  1>>>pF1KE3082 243 - 243 aa - 243 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7180+/-0.000844; mu= 11.3749+/- 0.051
 mean_var=58.4404+/-11.546, 0's: 0 Z-trim(105.8): 8  B-trim: 0 in 0/50
 Lambda= 0.167771
 statistics sampled from 8624 (8627) to 8624 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.265), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS5888.1 TPK1 gene_id:27010|Hs108|chr7           ( 243) 1644 406.2  1e-113
CCDS55178.1 TPK1 gene_id:27010|Hs108|chr7          ( 194)  809 204.0 5.8e-53


>>CCDS5888.1 TPK1 gene_id:27010|Hs108|chr7                (243 aa)
 initn: 1644 init1: 1644 opt: 1644  Z-score: 2154.9  bits: 406.2 E(32554): 1e-113
Smith-Waterman score: 1644; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KE3 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA
              190       200       210       220       230       240

          
pF1KE3 IKS
       :::
CCDS58 IKS
          

>>CCDS55178.1 TPK1 gene_id:27010|Hs108|chr7               (194 aa)
 initn: 1322 init1: 809 opt: 809  Z-score: 1064.3  bits: 204.0 E(32554): 5.8e-53
Smith-Waterman score: 1228; 79.8% identity (79.8% similar) in 243 aa overlap (1-243:1-194)

               10        20        30        40        50        60
pF1KE3 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS55 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLK--
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE3 VIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEG
                                                      :::::::::::::
CCDS55 -----------------------------------------------GKHRLHVDTGMEG
                                                     120       130 

              190       200       210       220       230       240
pF1KE3 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA
             140       150       160       170       180       190 

          
pF1KE3 IKS
       :::
CCDS55 IKS
          




243 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:16:13 2016 done: Sun Nov  6 05:16:13 2016
 Total Scan time:  2.160 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]