FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3077, 238 aa
  1>>>pF1KE3077 238 - 238 aa - 238 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0452+/-0.000816; mu= 11.5813+/- 0.050
 mean_var=105.6342+/-20.606, 0's: 0 Z-trim(110.5): 59  B-trim: 0 in 0/52
 Lambda= 0.124788
 statistics sampled from 11623 (11683) to 11623 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.359), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9         ( 238) 1618 301.3 3.6e-82
CCDS12030.1 CDC34 gene_id:997|Hs108|chr19          ( 236) 1319 247.5 5.6e-66
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17        ( 170)  610 119.8 1.2e-27
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21        ( 165)  516 102.8 1.4e-22
CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21        ( 137)  478 95.9 1.4e-20


>>CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9              (238 aa)
 initn: 1618 init1: 1618 opt: 1618  Z-score: 1588.8  bits: 301.3 E(32554): 3.6e-82
Smith-Waterman score: 1618; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)

               10        20        30        40        50        60
pF1KE3 MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 HIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 HIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 RTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDG
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KE3 VKVPTTLAEYCIKTKVPSNDNSSDLLYDDLYDDDIDDEDEEEEDADCYDDDDSGNEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 VKVPTTLAEYCIKTKVPSNDNSSDLLYDDLYDDDIDDEDEEEEDADCYDDDDSGNEES
              190       200       210       220       230        

>>CCDS12030.1 CDC34 gene_id:997|Hs108|chr19               (236 aa)
 initn: 1390 init1: 1273 opt: 1319  Z-score: 1297.9  bits: 247.5 E(32554): 5.6e-66
Smith-Waterman score: 1319; 80.4% identity (93.3% similar) in 240 aa overlap (1-238:1-236)

               10        20        30        40        50        60
pF1KE3 MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKA
       ::.  . ::::::.::::.::::::::::.:::::.::::::::::::::: ::::::::
CCDS12 MARPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 HIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNV
       ..:::::::::::.::::::::::::::.:::::::::::::::::::::::::::::::
CCDS12 RLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 RTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDG
       :::::::::::::::::::::::::::.:::..:::::.::..:::::: .::..::.::
CCDS12 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDG
              130       140       150       160       170       180

              190       200       210       220         230        
pF1KE3 VKVPTTLAEYCIKTKVPSNDNSSDLLYDDLYDDDIDDEDEEEEDADCY--DDDDSGNEES
       :::::::::::.:::.:. :..:::.::: :.   : : ::: :. :.  :.::::.:::
CCDS12 VKVPTTLAEYCVKTKAPAPDEGSDLFYDDYYE---DGEVEEEADS-CFGDDEDDSGTEES
              190       200       210          220        230      

>>CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17             (170 aa)
 initn: 596 init1: 556 opt: 610  Z-score: 610.0  bits: 119.8 E(32554): 1.2e-27
Smith-Waterman score: 610; 53.0% identity (77.1% similar) in 166 aa overlap (6-167:1-163)

               10          20        30        40        50        
pF1KE3 MAQQQMTSSQKALML--ELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYF
            ::  :.::.:  .:  :...:::::   :.:..::: ::: :.:::.:::::: :
CCDS32      MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVF
                    10        20        30        40        50     

       60        70        80        90       100       110        
pF1KE3 KAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQ
       :::. :: :::  :: ..:.:..::::. .:::::::::: : .:  . : : ::: : .
CCDS32 KAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIH
          60        70        80        90       100       110     

      120       130       140       150         160       170      
pF1KE3 NVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKD--KEYAEIIRKQVSATKAEA
       .:.::..::::.: .::  :::::::.   ..::.... .  .. :. .::         
CCDS32 TVETIMISVISMLADPNGDSPANVDAA---KEWREDRNGEFKRKVARCVRKSQETAFE  
         120       130       140          150       160       170  

        180       190       200       210       220       230      
pF1KE3 EKDGVKVPTTLAEYCIKTKVPSNDNSSDLLYDDLYDDDIDDEDEEEEDADCYDDDDSGNE

>>CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21             (165 aa)
 initn: 514 init1: 495 opt: 516  Z-score: 518.7  bits: 102.8 E(32554): 1.4e-22
Smith-Waterman score: 516; 50.0% identity (70.4% similar) in 162 aa overlap (8-169:4-158)

               10        20        30        40        50        60
pF1KE3 MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKA
              .. : :: : :.:  .: ::.    ..: ....::. :.:: .: .: : : :
CCDS13     MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KE3 HIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNV
        ..::.::: ::: .::  .:.::::: .: ::::::: : :::.. :  .:::.:.:.:
CCDS13 ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KE3 RTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDG
       . :::::.:.: :::  : :::::: :   :::    :.:    : ::.           
CCDS13 EKILLSVVSMLAEPNDESGANVDASKM---WRD----DREQFYKIAKQIVQKSLGL    
        120       130       140              150       160         

              190       200       210       220       230        
pF1KE3 VKVPTTLAEYCIKTKVPSNDNSSDLLYDDLYDDDIDDEDEEEEDADCYDDDDSGNEES

>>CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21             (137 aa)
 initn: 466 init1: 447 opt: 478  Z-score: 482.9  bits: 95.9 E(32554): 1.4e-20
Smith-Waterman score: 478; 52.6% identity (73.0% similar) in 137 aa overlap (33-169:1-130)

             10        20        30        40        50        60  
pF1KE3 QQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHI
                                     ..: ....::. :.:: .: .: : : : .
CCDS33                               MNEENFFEWEALIMGPEDTCFEFGVFPAIL
                                             10        20        30

             70        80        90       100       110       120  
pF1KE3 KFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRT
       .::.::: ::: .::  .:.::::: .: ::::::: : :::.. :  .:::.:.:.:. 
CCDS33 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK
               40        50        60        70        80        90

            130       140       150       160       170       180  
pF1KE3 ILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDGVK
       :::::.:.: :::  : :::::: :   :::    :.:    : ::.             
CCDS33 ILLSVVSMLAEPNDESGANVDASKM---WRD----DREQFYKIAKQIVQKSLGL      
              100       110              120       130             

            190       200       210       220       230        
pF1KE3 VPTTLAEYCIKTKVPSNDNSSDLLYDDLYDDDIDDEDEEEEDADCYDDDDSGNEES




238 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:17:28 2016 done: Sun Nov  6 05:17:28 2016
 Total Scan time:  2.070 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]