Result of FASTA (omim) for
pFN21AE3076
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3076, 237 aa
1>>>pF1KE3076 237 - 237 aa - 237 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7528+/-0.000434; mu= 17.5900+/- 0.027
mean_var=94.7808+/-18.975, 0's: 0 Z-trim(113.4): 428 B-trim: 0 in 0/52
Lambda= 0.131739
statistics sampled from 22164 (22689) to 22164 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.266), width: 16
Scan time: 6.250
The best scores are: opt bits E(85289)
NP_004785 (OMIM: 300333) ras-related protein Rab-3 ( 237) 1582 310.9 1.2e-84
XP_016885452 (OMIM: 300333) PREDICTED: ras-related ( 161) 1027 205.2 5.4e-53
NP_112586 (OMIM: 605950,615222) ras-related protei ( 229) 882 177.9 1.3e-44
XP_011530601 (OMIM: 605950,615222) PREDICTED: ras- ( 277) 882 178.0 1.5e-44
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203) 534 111.6 1e-24
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203) 534 111.6 1e-24
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203) 534 111.6 1e-24
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203) 534 111.6 1e-24
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201) 533 111.5 1.1e-24
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205) 520 109.0 6.4e-24
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201) 501 105.4 7.8e-23
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207) 483 102.0 8.5e-22
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207) 480 101.4 1.3e-21
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200) 478 101.0 1.6e-21
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203) 477 100.8 1.8e-21
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215) 477 100.8 1.9e-21
NP_741995 (OMIM: 300774) ras-related protein Rab-3 ( 213) 473 100.1 3.2e-21
NP_067075 (OMIM: 602207,614222) ras-related protei ( 206) 447 95.1 9.7e-20
NP_004654 (OMIM: 605570) ras-related protein Rab-1 ( 216) 440 93.8 2.5e-19
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218) 437 93.2 3.7e-19
XP_016873867 (OMIM: 612565) PREDICTED: ras-related ( 237) 436 93.1 4.5e-19
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256) 432 92.4 8e-19
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216) 422 90.4 2.7e-18
NP_057406 (OMIM: 612673) ras-related protein Rab-1 ( 215) 421 90.2 3.1e-18
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212) 420 90.0 3.5e-18
NP_002859 (OMIM: 179514) ras-related protein Rab-5 ( 215) 420 90.0 3.5e-18
NP_001238965 (OMIM: 179514) ras-related protein Ra ( 215) 420 90.0 3.5e-18
XP_005269109 (OMIM: 179514) PREDICTED: ras-related ( 215) 420 90.0 3.5e-18
XP_005269108 (OMIM: 179514) PREDICTED: ras-related ( 215) 420 90.0 3.5e-18
NP_002860 (OMIM: 179513) ras-related protein Rab-6 ( 208) 419 89.8 3.9e-18
XP_005251788 (OMIM: 611344) PREDICTED: ras and EF- ( 611) 423 91.1 4.5e-18
XP_005251787 (OMIM: 611344) PREDICTED: ras and EF- ( 717) 423 91.2 5e-18
NP_689786 (OMIM: 611344) ras and EF-hand domain-co ( 740) 423 91.2 5.1e-18
NP_004153 (OMIM: 179512) ras-related protein Rab-5 ( 215) 416 89.3 5.9e-18
NP_942599 (OMIM: 179513) ras-related protein Rab-6 ( 208) 413 88.7 8.6e-18
NP_001317400 (OMIM: 609956) ras-related protein Ra ( 196) 412 88.4 9.4e-18
NP_958842 (OMIM: 604037) ras-related protein Rab-5 ( 216) 412 88.5 1e-17
NP_004574 (OMIM: 604037) ras-related protein Rab-5 ( 216) 412 88.5 1e-17
XP_011523392 (OMIM: 604037) PREDICTED: ras-related ( 216) 412 88.5 1e-17
XP_011523393 (OMIM: 604037) PREDICTED: ras-related ( 216) 412 88.5 1e-17
NP_001006639 (OMIM: 609956) ras-related protein Ra ( 223) 412 88.5 1e-17
NP_001157461 (OMIM: 609956) ras-related protein Ra ( 228) 412 88.5 1e-17
NP_001294982 (OMIM: 605455) ras-related protein Ra ( 190) 411 88.2 1.1e-17
NP_001238968 (OMIM: 604037) ras-related protein Ra ( 249) 412 88.6 1.1e-17
XP_011519339 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 410 88.6 2.2e-17
XP_011519340 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 410 88.6 2.2e-17
NP_001138430 (OMIM: 614178) EF-hand calcium-bindin ( 731) 410 88.8 2.8e-17
XP_011519338 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 410 88.8 2.8e-17
XP_011519336 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 410 88.8 2.8e-17
XP_006719084 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 410 88.8 2.8e-17
>>NP_004785 (OMIM: 300333) ras-related protein Rab-33A [ (237 aa)
initn: 1582 init1: 1582 opt: 1582 Z-score: 1640.5 bits: 310.9 E(85289): 1.2e-84
Smith-Waterman score: 1582; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KE3 MAQPILGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAQPILGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFET
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 SAKDPKESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SAKDPKESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
190 200 210 220 230
>>XP_016885452 (OMIM: 300333) PREDICTED: ras-related pro (161 aa)
initn: 1027 init1: 1027 opt: 1027 Z-score: 1072.3 bits: 205.2 E(85289): 5.4e-53
Smith-Waterman score: 1027; 98.7% identity (99.3% similar) in 153 aa overlap (85-237:9-161)
60 70 80 90 100 110
pF1KE3 RFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVV
. ::::::::::::::::::::::::::::
XP_016 MMPTQEALLAVQVWDTAGQERFRKSMVEHYYRNVHAVV
10 20 30
120 130 140 150 160 170
pF1KE3 FVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHN
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE3 MLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTS
100 110 120 130 140 150
pF1KE3 CPC
:::
XP_016 CPC
160
>>NP_112586 (OMIM: 605950,615222) ras-related protein Ra (229 aa)
initn: 872 init1: 872 opt: 882 Z-score: 921.7 bits: 177.9 E(85289): 1.3e-44
Smith-Waterman score: 882; 64.5% identity (84.7% similar) in 203 aa overlap (35-237:32-229)
10 20 30 40 50 60
pF1KE3 ILGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDK
:::::::::::::::::::.:::.: :::.
NP_112 AEEMESSLEASFSSSGAVSGASGFLPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTS
:::::::::::..:::.::.::.:.::::::::::::::.::::::::::::::.:.:.:
NP_112 TEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 FTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKD
: .: ::.::. : . .:..::::::::: ::::..:: ::::.:.: :::::::.
NP_112 FHSLPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKN
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 PKESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
:.....::.::: :: .::..: :. . ..: . : : :. : .: :
NP_112 PNDNDHVEAIFMTLAHKLKSHKPLMLSQPP-DNGIILKPE-PKPA---MTCWC
190 200 210 220
>>XP_011530601 (OMIM: 605950,615222) PREDICTED: ras-rela (277 aa)
initn: 872 init1: 872 opt: 882 Z-score: 920.8 bits: 178.0 E(85289): 1.5e-44
Smith-Waterman score: 882; 64.5% identity (84.7% similar) in 203 aa overlap (35-237:80-277)
10 20 30 40 50 60
pF1KE3 ILGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDK
:::::::::::::::::::.:::.: :::.
XP_011 AEEMESSLEASFSSSGAVSGASGFLPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR
50 60 70 80 90 100
70 80 90 100 110 120
pF1KE3 TEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTS
:::::::::::..:::.::.::.:.::::::::::::::.::::::::::::::.:.:.:
XP_011 TEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS
110 120 130 140 150 160
130 140 150 160 170 180
pF1KE3 FTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKD
: .: ::.::. : . .:..::::::::: ::::..:: ::::.:.: :::::::.
XP_011 FHSLPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKN
170 180 190 200 210 220
190 200 210 220 230
pF1KE3 PKESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
:.....::.::: :: .::..: :. . ..: . : : :. : .: :
XP_011 PNDNDHVEAIFMTLAHKLKSHKPLMLSQPP-DNGIILKPE-PKPA---MTCWC
230 240 250 260 270
>>NP_001272988 (OMIM: 605693) ras-related protein Rab-30 (203 aa)
initn: 470 init1: 296 opt: 534 Z-score: 564.8 bits: 111.6 E(85289): 1e-24
Smith-Waterman score: 534; 52.1% identity (77.2% similar) in 167 aa overlap (36-202:9-170)
10 20 30 40 50 60
pF1KE3 LGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKT
.:::..::...::::::. :: : ::
NP_001 MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ
10 20 30
70 80 90 100 110 120
pF1KE3 EATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSF
::::::: :::::.:::.:.:.:::::::::: :... :::...:....::.: ::
NP_001 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR-SITQSYYRSANALILTYDITCEESF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 TNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDP
: :..: . .: .. :::::: :: :. .: .. : .:..:..: .:::::
NP_001 RCLPEWLREIEQYASNKVIT-VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK--
100 110 120 130 140 150
190 200 210 220 230
pF1KE3 KESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
::.:::..:. :::::
NP_001 -ESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN
160 170 180 190 200
>>NP_001272989 (OMIM: 605693) ras-related protein Rab-30 (203 aa)
initn: 470 init1: 296 opt: 534 Z-score: 564.8 bits: 111.6 E(85289): 1e-24
Smith-Waterman score: 534; 52.1% identity (77.2% similar) in 167 aa overlap (36-202:9-170)
10 20 30 40 50 60
pF1KE3 LGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKT
.:::..::...::::::. :: : ::
NP_001 MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ
10 20 30
70 80 90 100 110 120
pF1KE3 EATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSF
::::::: :::::.:::.:.:.:::::::::: :... :::...:....::.: ::
NP_001 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR-SITQSYYRSANALILTYDITCEESF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 TNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDP
: :..: . .: .. :::::: :: :. .: .. : .:..:..: .:::::
NP_001 RCLPEWLREIEQYASNKVIT-VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK--
100 110 120 130 140 150
190 200 210 220 230
pF1KE3 KESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
::.:::..:. :::::
NP_001 -ESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN
160 170 180 190 200
>>NP_001272990 (OMIM: 605693) ras-related protein Rab-30 (203 aa)
initn: 470 init1: 296 opt: 534 Z-score: 564.8 bits: 111.6 E(85289): 1e-24
Smith-Waterman score: 534; 52.1% identity (77.2% similar) in 167 aa overlap (36-202:9-170)
10 20 30 40 50 60
pF1KE3 LGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKT
.:::..::...::::::. :: : ::
NP_001 MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ
10 20 30
70 80 90 100 110 120
pF1KE3 EATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSF
::::::: :::::.:::.:.:.:::::::::: :... :::...:....::.: ::
NP_001 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR-SITQSYYRSANALILTYDITCEESF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 TNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDP
: :..: . .: .. :::::: :: :. .: .. : .:..:..: .:::::
NP_001 RCLPEWLREIEQYASNKVIT-VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK--
100 110 120 130 140 150
190 200 210 220 230
pF1KE3 KESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
::.:::..:. :::::
NP_001 -ESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN
160 170 180 190 200
>>NP_055303 (OMIM: 605693) ras-related protein Rab-30 [H (203 aa)
initn: 470 init1: 296 opt: 534 Z-score: 564.8 bits: 111.6 E(85289): 1e-24
Smith-Waterman score: 534; 52.1% identity (77.2% similar) in 167 aa overlap (36-202:9-170)
10 20 30 40 50 60
pF1KE3 LGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKT
.:::..::...::::::. :: : ::
NP_055 MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ
10 20 30
70 80 90 100 110 120
pF1KE3 EATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSF
::::::: :::::.:::.:.:.:::::::::: :... :::...:....::.: ::
NP_055 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR-SITQSYYRSANALILTYDITCEESF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 TNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDP
: :..: . .: .. :::::: :: :. .: .. : .:..:..: .:::::
NP_055 RCLPEWLREIEQYASNKVIT-VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK--
100 110 120 130 140 150
190 200 210 220 230
pF1KE3 KESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
::.:::..:. :::::
NP_055 -ESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN
160 170 180 190 200
>>NP_006852 (OMIM: 604199) ras-related protein Rab-35 is (201 aa)
initn: 501 init1: 273 opt: 533 Z-score: 563.8 bits: 111.5 E(85289): 1.1e-24
Smith-Waterman score: 533; 46.3% identity (71.9% similar) in 203 aa overlap (36-237:8-201)
10 20 30 40 50 60
pF1KE3 LGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKT
.::...::::.:::. : .:: .:: .
NP_006 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSY
10 20 30
70 80 90 100 110 120
pF1KE3 EATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSF
.::::::. .::::.:::.:.:.:::::::::: ... :::..:.:. :::::. ::
NP_006 ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR-TITSTYYRGTHGVIVVYDVTSAESF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 TNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDP
.:.: :..: : . : ..::::: : :. : .. : ::: .. :::::::
NP_006 VNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK--
100 110 120 130 140 150
190 200 210 220 230
pF1KE3 KESQNVESIFMCLA-CRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
:. ::: .: :.. :.:.:. : .. ..::. : :: .... : : :
NP_006 -ENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLT--KNSKRKKRC-C
160 170 180 190 200
>>NP_004152 (OMIM: 179508) ras-related protein Rab-1A is (205 aa)
initn: 505 init1: 270 opt: 520 Z-score: 550.4 bits: 109.0 E(85289): 6.4e-24
Smith-Waterman score: 520; 43.8% identity (72.7% similar) in 194 aa overlap (36-227:11-199)
10 20 30 40 50 60
pF1KE3 LGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKT
.::...::::.:::.:: .:: :. ..
NP_004 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESY
10 20 30 40
70 80 90 100 110 120
pF1KE3 EATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSF
.::::::. .:.:..:. ::.:.:::::::::: ... :::..:... ::::: . ::
NP_004 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIVVYDVTDQESF
50 60 70 80 90
130 140 150 160 170 180
pF1KE3 TNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDP
.:.:.:.:: . .: : :.:::::::: . : . : .:::. .. ..:::::.
NP_004 NNVKQWLQEIDRYASEN-VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN-
100 110 120 130 140 150
190 200 210 220 230
pF1KE3 KESQNVESIFMCLACRLKAQ--KSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
. :::. :: .: ..: . . ::... :.:. :
NP_004 --ATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC
160 170 180 190 200
237 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:17:54 2016 done: Sun Nov 6 05:17:55 2016
Total Scan time: 6.250 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]