FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3073, 234 aa
  1>>>pF1KE3073 234 - 234 aa - 234 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5156+/-0.00105; mu= 12.6877+/- 0.063
 mean_var=60.0869+/-12.012, 0's: 0 Z-trim(102.1): 26  B-trim: 0 in 0/47
 Lambda= 0.165457
 statistics sampled from 6808 (6814) to 6808 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.209), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS9917.1 OTUB2 gene_id:78990|Hs108|chr14         ( 234) 1526 372.9  1e-103
CCDS8055.1 OTUB1 gene_id:55611|Hs108|chr11         ( 271)  728 182.4 2.5e-46


>>CCDS9917.1 OTUB2 gene_id:78990|Hs108|chr14              (234 aa)
 initn: 1526 init1: 1526 opt: 1526  Z-score: 1975.6  bits: 372.9 E(32554): 1e-103
Smith-Waterman score: 1526; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KE3 MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQI
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KE3 TALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 TALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH
              190       200       210       220       230    

>>CCDS8055.1 OTUB1 gene_id:55611|Hs108|chr11              (271 aa)
 initn: 708 init1: 598 opt: 728  Z-score: 945.1  bits: 182.4 E(32554): 2.5e-46
Smith-Waterman score: 728; 47.8% identity (79.5% similar) in 224 aa overlap (8-229:47-270)

                                      10        20         30      
pF1KE3                        MSETSFNLISEKCDILSILRDHPEN-RIYRRKIEELS
                                     :.::. ..  . ... :.  ::..::..: 
CCDS80 DSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLH
         20        30        40        50        60        70      

         40        50        60        70        80        90      
pF1KE3 KRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFR
       :... ::::. ::::::::.:.:.::.::  :.:. .::    .. .::.. :: :  ..
CCDS80 KKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIE
         80        90       100       110       120       130      

        100       110       120       130       140       150      
pF1KE3 NFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDE
       .: :.:....: :::. ::..::  :::::.::..: .::::::.... .. ::.:::. 
CCDS80 DFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG
        140       150       160       170       180       190      

        160       170       180       190       200        210     
pF1KE3 EMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTAL-NHHVFPEAATPS
          .:.:: .:::::  : :::.: ::.::::...::::.:. . .  : :.:::.. :.
CCDS80 GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPK
        200       210       220       230       240       250      

         220       230    
pF1KE3 VYLLYKTSHYNILYAADKH
       :::::. .::.:::     
CCDS80 VYLLYRPGHYDILYK    
        260       270     




234 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:19:01 2016 done: Sun Nov  6 05:19:02 2016
 Total Scan time:  1.770 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]