Result of FASTA (omim) for
pFN21AE3072
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3072, 230 aa
1>>>pF1KE3072 230 - 230 aa - 230 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4164+/-0.00035; mu= 13.2228+/- 0.022
mean_var=62.2326+/-12.719, 0's: 0 Z-trim(114.0): 53 B-trim: 183 in 1/53
Lambda= 0.162579
statistics sampled from 23542 (23609) to 23542 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.277), width: 16
Scan time: 5.440
The best scores are: opt bits E(85289)
NP_005993 (OMIM: 603090) ubiquitin carboxyl-termin ( 230) 1528 366.8 1.8e-101
XP_016876216 (OMIM: 603090) PREDICTED: ubiquitin c ( 226) 1486 356.9 1.6e-98
NP_001257881 (OMIM: 603090) ubiquitin carboxyl-ter ( 194) 1265 305.0 5.7e-83
XP_016876215 (OMIM: 603090) PREDICTED: ubiquitin c ( 252) 1053 255.4 6.6e-68
XP_016876214 (OMIM: 603090) PREDICTED: ubiquitin c ( 261) 1053 255.4 6.8e-68
XP_011533514 (OMIM: 603090) PREDICTED: ubiquitin c ( 294) 1053 255.4 7.6e-68
XP_011533515 (OMIM: 603090) PREDICTED: ubiquitin c ( 290) 1011 245.5 6.9e-65
NP_004172 (OMIM: 191342,613643,615491) ubiquitin c ( 223) 856 209.1 4.8e-54
XP_011533516 (OMIM: 603090) PREDICTED: ubiquitin c ( 258) 790 193.7 2.5e-49
NP_001186192 (OMIM: 610667) ubiquitin carboxyl-ter ( 316) 299 78.6 1.4e-14
NP_001186191 (OMIM: 610667) ubiquitin carboxyl-ter ( 326) 299 78.6 1.4e-14
NP_001186190 (OMIM: 610667) ubiquitin carboxyl-ter ( 328) 299 78.6 1.4e-14
NP_057068 (OMIM: 610667) ubiquitin carboxyl-termin ( 329) 299 78.6 1.4e-14
XP_016856922 (OMIM: 610667) PREDICTED: ubiquitin c ( 384) 299 78.6 1.7e-14
XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin c ( 393) 299 78.6 1.7e-14
XP_016856921 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 299 78.6 1.7e-14
XP_016856920 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 299 78.6 1.7e-14
XP_006711432 (OMIM: 610667) PREDICTED: ubiquitin c ( 410) 284 75.1 2e-13
XP_006711431 (OMIM: 610667) PREDICTED: ubiquitin c ( 411) 284 75.1 2e-13
XP_016856918 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 284 75.1 2.1e-13
XP_016856919 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 284 75.1 2.1e-13
XP_011507906 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 284 75.1 2.1e-13
XP_006711430 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 284 75.1 2.1e-13
XP_005245301 (OMIM: 610667) PREDICTED: ubiquitin c ( 422) 284 75.1 2.1e-13
XP_006711429 (OMIM: 610667) PREDICTED: ubiquitin c ( 423) 284 75.1 2.1e-13
XP_005245305 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 267 71.0 2.6e-12
XP_005245304 (OMIM: 610667) PREDICTED: ubiquitin c ( 320) 267 71.0 2.6e-12
XP_016856924 (OMIM: 610667) PREDICTED: ubiquitin c ( 348) 267 71.1 2.8e-12
XP_011507909 (OMIM: 610667) PREDICTED: ubiquitin c ( 347) 252 67.5 3.2e-11
XP_016856923 (OMIM: 610667) PREDICTED: ubiquitin c ( 375) 252 67.6 3.4e-11
XP_006711433 (OMIM: 610667) PREDICTED: ubiquitin c ( 376) 252 67.6 3.4e-11
XP_011532454 (OMIM: 603089,614327) PREDICTED: ubiq ( 714) 243 65.6 2.6e-10
NP_004647 (OMIM: 603089,614327) ubiquitin carboxyl ( 729) 243 65.6 2.6e-10
XP_011532452 (OMIM: 603089,614327) PREDICTED: ubiq ( 737) 243 65.6 2.7e-10
XP_011532451 (OMIM: 603089,614327) PREDICTED: ubiq ( 752) 243 65.6 2.7e-10
XP_016862792 (OMIM: 603089,614327) PREDICTED: ubiq ( 711) 236 63.9 8e-10
XP_011532453 (OMIM: 603089,614327) PREDICTED: ubiq ( 734) 236 63.9 8.2e-10
XP_016856926 (OMIM: 610667) PREDICTED: ubiquitin c ( 291) 221 60.2 4.2e-09
XP_016856925 (OMIM: 610667) PREDICTED: ubiquitin c ( 292) 221 60.2 4.2e-09
XP_011507911 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 206 56.7 5.2e-08
XP_011507910 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 206 56.7 5.2e-08
XP_016856933 (OMIM: 610667) PREDICTED: ubiquitin c ( 192) 157 45.2 9.6e-05
XP_016856932 (OMIM: 610667) PREDICTED: ubiquitin c ( 203) 157 45.2 0.0001
XP_016856931 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 157 45.2 0.0001
XP_016856930 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 157 45.2 0.0001
XP_005245306 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 157 45.2 0.0001
XP_016856929 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 157 45.2 0.0001
XP_016856928 (OMIM: 610667) PREDICTED: ubiquitin c ( 231) 142 41.7 0.0013
XP_006711434 (OMIM: 610667) PREDICTED: ubiquitin c ( 232) 142 41.7 0.0013
XP_016856927 (OMIM: 610667) PREDICTED: ubiquitin c ( 232) 142 41.7 0.0013
>>NP_005993 (OMIM: 603090) ubiquitin carboxyl-terminal h (230 aa)
initn: 1528 init1: 1528 opt: 1528 Z-score: 1942.8 bits: 366.8 E(85289): 1.8e-101
Smith-Waterman score: 1528; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230)
10 20 30 40 50 60
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
190 200 210 220 230
>>XP_016876216 (OMIM: 603090) PREDICTED: ubiquitin carbo (226 aa)
initn: 1406 init1: 1406 opt: 1486 Z-score: 1889.7 bits: 356.9 E(85289): 1.6e-98
Smith-Waterman score: 1486; 98.3% identity (98.3% similar) in 230 aa overlap (1-230:1-226)
10 20 30 40 50 60
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
:::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_016 MEGQRWLPLEANPE----FLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
180 190 200 210 220
>>NP_001257881 (OMIM: 603090) ubiquitin carboxyl-termina (194 aa)
initn: 1265 init1: 1265 opt: 1265 Z-score: 1610.6 bits: 305.0 E(85289): 5.7e-83
Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 194 aa overlap (37-230:1-194)
10 20 30 40 50 60
pF1KE3 LPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFR
::::::::::::::::::::::::::::::
NP_001 MDPELLSMVPRPVCAVLLLFPITEKYEVFR
10 20 30
70 80 90 100 110 120
pF1KE3 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR
100 110 120 130 140 150
190 200 210 220 230
pF1KE3 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
160 170 180 190
>>XP_016876215 (OMIM: 603090) PREDICTED: ubiquitin carbo (252 aa)
initn: 1213 init1: 1053 opt: 1053 Z-score: 1340.1 bits: 255.4 E(85289): 6.6e-68
Smith-Waterman score: 1084; 74.2% identity (74.2% similar) in 248 aa overlap (1-184:1-248)
10 20 30 40 50 60
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
70 80 90 100 110 120
130 140 150
pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE----------------------
::::::::::::::::::::::::::::::::::::::
XP_016 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC
130 140 150 160 170 180
160 170
pF1KE3 ------------------------------------------APSIDEKVDLHFIALVHV
::::::::::::::::::
XP_016 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV
190 200 210 220 230 240
180 190 200 210 220 230
pF1KE3 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
::::::::
XP_016 DGHLYELDLLEF
250
>>XP_016876214 (OMIM: 603090) PREDICTED: ubiquitin carbo (261 aa)
initn: 1205 init1: 1053 opt: 1053 Z-score: 1339.9 bits: 255.4 E(85289): 6.8e-68
Smith-Waterman score: 1080; 72.4% identity (73.2% similar) in 254 aa overlap (1-190:1-254)
10 20 30 40 50 60
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
70 80 90 100 110 120
130 140 150
pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE----------------------
::::::::::::::::::::::::::::::::::::::
XP_016 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC
130 140 150 160 170 180
160 170
pF1KE3 ------------------------------------------APSIDEKVDLHFIALVHV
::::::::::::::::::
XP_016 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV
190 200 210 220 230 240
180 190 200 210 220 230
pF1KE3 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
::::::: . . :
XP_016 DGHLYELGNFHSHPNLQQPPS
250 260
>>XP_011533514 (OMIM: 603090) PREDICTED: ubiquitin carbo (294 aa)
initn: 1519 init1: 1053 opt: 1053 Z-score: 1339.0 bits: 255.4 E(85289): 7.6e-68
Smith-Waterman score: 1187; 75.6% identity (75.6% similar) in 262 aa overlap (1-198:1-262)
10 20 30 40 50 60
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
70 80 90 100 110 120
130 140 150
pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE----------------------
::::::::::::::::::::::::::::::::::::::
XP_011 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC
130 140 150 160 170 180
160 170
pF1KE3 ------------------------------------------APSIDEKVDLHFIALVHV
::::::::::::::::::
XP_011 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV
190 200 210 220 230 240
180 190 200 210 220 230
pF1KE3 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
::::::::::::::::::::::
XP_011 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
250 260 270 280 290
>>XP_011533515 (OMIM: 603090) PREDICTED: ubiquitin carbo (290 aa)
initn: 1487 init1: 925 opt: 1011 Z-score: 1285.9 bits: 245.5 E(85289): 6.9e-65
Smith-Waterman score: 1145; 74.0% identity (74.0% similar) in 262 aa overlap (1-198:1-258)
10 20 30 40 50 60
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
:::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_011 MEGQRWLPLEANPE----FLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
60 70 80 90 100 110
130 140 150
pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE----------------------
::::::::::::::::::::::::::::::::::::::
XP_011 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC
120 130 140 150 160 170
160 170
pF1KE3 ------------------------------------------APSIDEKVDLHFIALVHV
::::::::::::::::::
XP_011 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV
180 190 200 210 220 230
180 190 200 210 220 230
pF1KE3 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
::::::::::::::::::::::
XP_011 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
240 250 260 270 280 290
>>NP_004172 (OMIM: 191342,613643,615491) ubiquitin carbo (223 aa)
initn: 621 init1: 342 opt: 856 Z-score: 1091.2 bits: 209.1 E(85289): 4.8e-54
Smith-Waterman score: 856; 55.2% identity (83.4% similar) in 223 aa overlap (8-230:5-222)
10 20 30 40 50 60
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
:.: :::. :. :..::. .:.:::: :.. : :. :: :.::.:::::.:
NP_004 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::
NP_004 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
.:: :. .::::.::. .:. .::...:.. :.::: . .:.::..::: . .:::::
NP_004 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHL
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
:::::: :::.::: .:..:::.:: .::..: ::. :.::.:.:: :
NP_004 YELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
180 190 200 210 220
>>XP_011533516 (OMIM: 603090) PREDICTED: ubiquitin carbo (258 aa)
initn: 1256 init1: 790 opt: 790 Z-score: 1006.6 bits: 193.7 E(85289): 2.5e-49
Smith-Waterman score: 924; 71.7% identity (71.7% similar) in 226 aa overlap (37-198:1-226)
10 20 30 40 50 60
pF1KE3 LPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFR
::::::::::::::::::::::::::::::
XP_011 MDPELLSMVPRPVCAVLLLFPITEKYEVFR
10 20 30
70 80 90 100 110 120
pF1KE3 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES
40 50 60 70 80 90
130 140 150
pF1KE3 VSMSPEERARYLENYDAIRVTHETSAHEGQTE----------------------------
::::::::::::::::::::::::::::::::
XP_011 VSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLCHHASLP
100 110 120 130 140 150
160 170 180
pF1KE3 ------------------------------------APSIDEKVDLHFIALVHVDGHLYE
::::::::::::::::::::::::
XP_011 WVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHVDGHLYE
160 170 180 190 200 210
190 200 210 220 230
pF1KE3 LDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
::::::::::::::::
XP_011 LDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
220 230 240 250
>>NP_001186192 (OMIM: 610667) ubiquitin carboxyl-termina (316 aa)
initn: 177 init1: 98 opt: 299 Z-score: 382.8 bits: 78.6 E(85289): 1.4e-14
Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (6-227:8-223)
10 20 30 40 50
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI
: .:..: : ....: .: . : ......:: . . .:: ....::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF--
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG
:.. :: : :: ....: ::.:.:::.: ... .. : ... .:. :
NP_001 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL
::..: : : :.. .. : : :.:: .:.. :.. . : : :. .::..
NP_001 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPD-ELRFNAIALSAA
: :.:.:::::: . ::. : ... . . : .: ... . :.::: .:.
NP_001 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK
170 180 190 200 210 220
NP_001 MIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRK
230 240 250 260 270 280
230 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:19:31 2016 done: Sun Nov 6 05:19:32 2016
Total Scan time: 5.440 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]