Result of FASTA (ccds) for
pFN21AE3072
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3072, 230 aa
1>>>pF1KE3072 230 - 230 aa - 230 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4390+/-0.000804; mu= 13.0701+/- 0.049
mean_var=59.1636+/-11.841, 0's: 0 Z-trim(106.8): 23 B-trim: 0 in 0/50
Lambda= 0.166743
statistics sampled from 9204 (9218) to 9204 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.283), width: 16
Scan time: 2.200
The best scores are: opt bits E(32554)
CCDS9453.1 UCHL3 gene_id:7347|Hs108|chr13 ( 230) 1528 375.7 1.4e-104
CCDS73586.1 UCHL3 gene_id:7347|Hs108|chr13 ( 194) 1265 312.4 1.3e-85
CCDS3462.1 UCHL1 gene_id:7345|Hs108|chr4 ( 223) 856 214.0 6.3e-56
CCDS55669.1 UCHL5 gene_id:51377|Hs108|chr1 ( 316) 299 80.1 1.9e-15
CCDS55670.1 UCHL5 gene_id:51377|Hs108|chr1 ( 326) 299 80.1 1.9e-15
CCDS55668.1 UCHL5 gene_id:51377|Hs108|chr1 ( 328) 299 80.1 1.9e-15
CCDS1378.1 UCHL5 gene_id:51377|Hs108|chr1 ( 329) 299 80.1 2e-15
CCDS2853.1 BAP1 gene_id:8314|Hs108|chr3 ( 729) 243 66.7 4.6e-11
>>CCDS9453.1 UCHL3 gene_id:7347|Hs108|chr13 (230 aa)
initn: 1528 init1: 1528 opt: 1528 Z-score: 1990.9 bits: 375.7 E(32554): 1.4e-104
Smith-Waterman score: 1528; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230)
10 20 30 40 50 60
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
190 200 210 220 230
>>CCDS73586.1 UCHL3 gene_id:7347|Hs108|chr13 (194 aa)
initn: 1265 init1: 1265 opt: 1265 Z-score: 1650.2 bits: 312.4 E(32554): 1.3e-85
Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 194 aa overlap (37-230:1-194)
10 20 30 40 50 60
pF1KE3 LPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFR
::::::::::::::::::::::::::::::
CCDS73 MDPELLSMVPRPVCAVLLLFPITEKYEVFR
10 20 30
70 80 90 100 110 120
pF1KE3 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR
100 110 120 130 140 150
190 200 210 220 230
pF1KE3 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
160 170 180 190
>>CCDS3462.1 UCHL1 gene_id:7345|Hs108|chr4 (223 aa)
initn: 621 init1: 342 opt: 856 Z-score: 1117.5 bits: 214.0 E(32554): 6.3e-56
Smith-Waterman score: 856; 55.2% identity (83.4% similar) in 223 aa overlap (8-230:5-222)
10 20 30 40 50 60
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
:.: :::. :. :..::. .:.:::: :.. : :. :: :.::.:::::.:
CCDS34 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::
CCDS34 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
.:: :. .::::.::. .:. .::...:.. :.::: . .:.::..::: . .:::::
CCDS34 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHL
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
:::::: :::.::: .:..:::.:: .::..: ::. :.::.:.:: :
CCDS34 YELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
180 190 200 210 220
>>CCDS55669.1 UCHL5 gene_id:51377|Hs108|chr1 (316 aa)
initn: 177 init1: 98 opt: 299 Z-score: 390.9 bits: 80.1 E(32554): 1.9e-15
Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (6-227:8-223)
10 20 30 40 50
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI
: .:..: : ....: .: . : ......:: . . .:: ....::
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF--
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG
:.. :: : :: ....: ::.:.:::.: ... .. : ... .:. :
CCDS55 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL
::..: : : :.. .. : : :.:: .:.. :.. . : : :. .::..
CCDS55 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPD-ELRFNAIALSAA
: :.:.:::::: . ::. : ... . . : .: ... . :.::: .:.
CCDS55 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK
170 180 190 200 210 220
CCDS55 MIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRK
230 240 250 260 270 280
>>CCDS55670.1 UCHL5 gene_id:51377|Hs108|chr1 (326 aa)
initn: 177 init1: 98 opt: 299 Z-score: 390.7 bits: 80.1 E(32554): 1.9e-15
Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (6-227:8-223)
10 20 30 40 50
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI
: .:..: : ....: .: . : ......:: . . .:: ....::
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF--
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG
:.. :: : :: ....: ::.:.:::.: ... .. : ... .:. :
CCDS55 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL
::..: : : :.. .. : : :.:: .:.. :.. . : : :. .::..
CCDS55 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPD-ELRFNAIALSAA
: :.:.:::::: . ::. : ... . . : .: ... . :.::: .:.
CCDS55 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK
170 180 190 200 210 220
CCDS55 MIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRK
230 240 250 260 270 280
>>CCDS55668.1 UCHL5 gene_id:51377|Hs108|chr1 (328 aa)
initn: 177 init1: 98 opt: 299 Z-score: 390.6 bits: 80.1 E(32554): 1.9e-15
Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (6-227:8-223)
10 20 30 40 50
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI
: .:..: : ....: .: . : ......:: . . .:: ....::
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF--
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG
:.. :: : :: ....: ::.:.:::.: ... .. : ... .:. :
CCDS55 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL
::..: : : :.. .. : : :.:: .:.. :.. . : : :. .::..
CCDS55 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPD-ELRFNAIALSAA
: :.:.:::::: . ::. : ... . . : .: ... . :.::: .:.
CCDS55 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK
170 180 190 200 210 220
CCDS55 MIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRK
230 240 250 260 270 280
>>CCDS1378.1 UCHL5 gene_id:51377|Hs108|chr1 (329 aa)
initn: 177 init1: 98 opt: 299 Z-score: 390.6 bits: 80.1 E(32554): 2e-15
Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (6-227:8-223)
10 20 30 40 50
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI
: .:..: : ....: .: . : ......:: . . .:: ....::
CCDS13 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF--
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG
:.. :: : :: ....: ::.:.:::.: ... .. : ... .:. :
CCDS13 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL
::..: : : :.. .. : : :.:: .:.. :.. . : : :. .::..
CCDS13 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPD-ELRFNAIALSAA
: :.:.:::::: . ::. : ... . . : .: ... . :.::: .:.
CCDS13 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK
170 180 190 200 210 220
CCDS13 MIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRR
230 240 250 260 270 280
>>CCDS2853.1 BAP1 gene_id:8314|Hs108|chr3 (729 aa)
initn: 141 init1: 112 opt: 243 Z-score: 312.2 bits: 66.7 E(32554): 4.6e-11
Smith-Waterman score: 243; 24.7% identity (56.9% similar) in 239 aa overlap (6-227:5-233)
10 20 30 40 50 60
pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
:: ::..: . . .....:.. . : ..: .: : :: . ..:: :
CCDS28 MNKGWLELESDPGLFTLLVEDFGVK-GVQVEEIY----DLQSKCQGPVYGFIFLFKWIE
10 20 30 40 50
70 80 90 100 110
pF1KE3 KYEVFR--TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGST
. . : . . . .:......: .: : :.:.: .:. .. : .. . : :
CCDS28 ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSS---VDLGPT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 LKKFLEESVSMSPEERARYLENYDAIRVTHETSAH-------EGQTEAPSIDEKVDLHFI
:... . . ..::: .. . : . .:.. :. : :. .. .::.
CCDS28 LSRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFV
120 130 140 150 160 170
180 190 200 210 220
pF1KE3 ALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMER-------DP-DELRFN
. : . :.:.:::: : .::.:: ... : . . .::: .: ..:::
CCDS28 SYVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKAR--RVIMERIGLATAGEPYHDIRFN
180 190 200 210 220
230
pF1KE3 AIALSAA
.:.
CCDS28 LMAVVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSAS
230 240 250 260 270 280
230 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:19:30 2016 done: Sun Nov 6 05:19:30 2016
Total Scan time: 2.200 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]