Result of FASTA (ccds) for
pFN21AE3070
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3070, 227 aa
1>>>pF1KE3070 227 - 227 aa - 227 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2137+/-0.000822; mu= 13.7791+/- 0.049
mean_var=57.3075+/-11.131, 0's: 0 Z-trim(105.4): 22 B-trim: 104 in 1/50
Lambda= 0.169421
statistics sampled from 8411 (8424) to 8411 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.259), width: 16
Scan time: 2.020
The best scores are: opt bits E(32554)
CCDS5782.1 FAM3C gene_id:10447|Hs108|chr7 ( 227) 1511 377.5 3.9e-105
CCDS35453.1 FAM3A gene_id:60343|Hs108|chrX ( 230) 834 212.0 2.6e-55
CCDS55542.1 FAM3A gene_id:60343|Hs108|chrX ( 192) 804 204.6 3.5e-53
CCDS76060.1 FAM3A gene_id:60343|Hs108|chrX ( 244) 804 204.7 4.4e-53
CCDS2893.1 FAM3D gene_id:131177|Hs108|chr3 ( 224) 794 202.2 2.2e-52
CCDS13671.1 FAM3B gene_id:54097|Hs108|chr21 ( 235) 501 130.6 8.3e-31
CCDS42930.1 FAM3B gene_id:54097|Hs108|chr21 ( 187) 491 128.1 3.7e-30
CCDS55543.1 FAM3A gene_id:60343|Hs108|chrX ( 213) 440 115.7 2.3e-26
>>CCDS5782.1 FAM3C gene_id:10447|Hs108|chr7 (227 aa)
initn: 1511 init1: 1511 opt: 1511 Z-score: 2001.0 bits: 377.5 E(32554): 3.9e-105
Smith-Waterman score: 1511; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)
10 20 30 40 50 60
pF1KE3 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDASLGNLFARSALDTAARSTKPPRYKCGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDASLGNLFARSALDTAARSTKPPRYKCGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTGEVLDTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 SKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTGEVLDTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YFDMWGGDVAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSITNLGFRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 YFDMWGGDVAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSITNLGFRD
130 140 150 160 170 180
190 200 210 220
pF1KE3 NWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQKQD
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 NWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQKQD
190 200 210 220
>>CCDS35453.1 FAM3A gene_id:60343|Hs108|chrX (230 aa)
initn: 826 init1: 797 opt: 834 Z-score: 1106.6 bits: 212.0 E(32554): 2.6e-55
Smith-Waterman score: 834; 51.5% identity (82.7% similar) in 231 aa overlap (1-225:1-226)
10 20 30 40 50
pF1KE3 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDASLGNLFAR-SALDTAARS--TKPPR--
::.:: ..:: :. .:. :.: .. .. :. : : . : :. .: : ::
CCDS35 MRLAGPLRIVVLVVSVGVTWIVVSILL-----GGPGSGFPRIQQLFTSPESSVTAAPRAR
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 -YKCGISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTG
::::. . :::.:.::...::::::.::::::::..:::.::.:::::.:.::.:: .:
CCDS35 KYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 EVLDTKYFDMWGGDVAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSIT
:..... ::::.::: ...:.. ...::.:....::: :::.:.:.:.:...::: .
CCDS35 ELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAK
120 130 140 150 160 170
180 190 200 210 220
pF1KE3 NLGFRDNWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQKQD
.:.:::.::: :.::...:::::::.::.: .::::::::..:::::::..
CCDS35 ELAFRDSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGWPEALEMEGCIPRRSTAS
180 190 200 210 220 230
>>CCDS55542.1 FAM3A gene_id:60343|Hs108|chrX (192 aa)
initn: 797 init1: 797 opt: 804 Z-score: 1068.2 bits: 204.6 E(32554): 3.5e-53
Smith-Waterman score: 804; 56.5% identity (89.7% similar) in 184 aa overlap (42-225:8-188)
20 30 40 50 60 70
pF1KE3 AVAVFLLTFYVISQVFEIKMDASLGNLFARSALDTAARSTKPPRYKCGISKACPEKHFAF
:.. .: :. : ::::. . :::.:.::
CCDS55 MRLAGPESSVTAAPRARK---YKCGLPQPCPEEHLAF
10 20 30
80 90 100 110 120 130
pF1KE3 KMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTGEVLDTKYFDMWGGDVAP
...::::::.::::::::..:::.::.:::::.:.::.:: .::..... ::::.:::
CCDS55 RVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEARAFDMWAGDVND
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 FIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSITNLGFRDNWVFCGGKGIK
...:.. ...::.:....::: :::.:.:.:.:...::: . .:.:::.::: :.::..
CCDS55 LLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFRDSWVFVGAKGVQ
100 110 120 130 140 150
200 210 220
pF1KE3 TKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQKQD
.:::::::.::.: .::::::::..:::::::..
CCDS55 NKSPFEQHVKNSKHSNKYEGWPEALEMEGCIPRRSTAS
160 170 180 190
>>CCDS76060.1 FAM3A gene_id:60343|Hs108|chrX (244 aa)
initn: 814 init1: 797 opt: 804 Z-score: 1066.5 bits: 204.7 E(32554): 4.4e-53
Smith-Waterman score: 804; 56.5% identity (89.7% similar) in 184 aa overlap (42-225:60-240)
20 30 40 50 60 70
pF1KE3 AVAVFLLTFYVISQVFEIKMDASLGNLFARSALDTAARSTKPPRYKCGISKACPEKHFAF
:.. .: :. : ::::. . :::.:.::
CCDS76 AISVHCNLYLLGSSDSSAPASRVAETTGPESSVTAAPRARK---YKCGLPQPCPEEHLAF
30 40 50 60 70 80
80 90 100 110 120 130
pF1KE3 KMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTGEVLDTKYFDMWGGDVAP
...::::::.::::::::..:::.::.:::::.:.::.:: .::..... ::::.:::
CCDS76 RVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEARAFDMWAGDVND
90 100 110 120 130 140
140 150 160 170 180 190
pF1KE3 FIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSITNLGFRDNWVFCGGKGIK
...:.. ...::.:....::: :::.:.:.:.:...::: . .:.:::.::: :.::..
CCDS76 LLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFRDSWVFVGAKGVQ
150 160 170 180 190 200
200 210 220
pF1KE3 TKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQKQD
.:::::::.::.: .::::::::..:::::::..
CCDS76 NKSPFEQHVKNSKHSNKYEGWPEALEMEGCIPRRSTAS
210 220 230 240
>>CCDS2893.1 FAM3D gene_id:131177|Hs108|chr3 (224 aa)
initn: 825 init1: 768 opt: 794 Z-score: 1053.9 bits: 202.2 E(32554): 2.2e-52
Smith-Waterman score: 794; 51.3% identity (77.4% similar) in 226 aa overlap (1-225:1-222)
10 20 30 40 50
pF1KE3 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDA-SLGNLFARSALDTAARSTKPPRYKCG
:::.:. .:.. . ... :.. : . . ..: . : .: : .. . .::::
CCDS28 MRVSGVLRLLALIFAIVTTWMFIRSYMSFSMKTIRLPRWLAASP----TKEIQVKKYKCG
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 ISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTGEVLDT
. : :: ..::::. ::::::::: .:.:: ..:: ::::::::.:.::.:: :: ::
CCDS28 LIKPCPANYFAFKICSGAANVVGPTMCFEDRMIMSPVKNNVGRGLNIALVNGTTGAVLGQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 KYFDMWGGDVAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSITNLGFR
: :::..::: ...::: : :..::...::: .::.:::.:.:..::::. .::::
CCDS28 KAFDMYSGDVMHLVKFLKEIPGGALVLVASYDDPGTKMNDESRKLFSDLGSSYAKQLGFR
120 130 140 150 160 170
180 190 200 210 220
pF1KE3 DNWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQKQD
:.::: :.: .. :::::: .::. ::::::::::..:::::.: :
CCDS28 DSWVFIGAKDLRGKSPFEQFLKNSPDTNKYEGWPELLEMEGCMPPKPF
180 190 200 210 220
>>CCDS13671.1 FAM3B gene_id:54097|Hs108|chr21 (235 aa)
initn: 437 init1: 221 opt: 501 Z-score: 666.5 bits: 130.6 E(32554): 8.3e-31
Smith-Waterman score: 501; 36.8% identity (65.8% similar) in 228 aa overlap (5-226:7-234)
10 20 30 40 50
pF1KE3 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDASLGN--LFARSALDTAA-RSTKPPR
: :.: .: . : ..: . :. :: :.. :: . . .. : :
CCDS13 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSSAAYSIRSIGERPVLKAPVPKR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 YKCGISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTGE
:: :: .:... ::.. :::.:::.::. .::.::::.:..: ::.
CCDS13 QKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVTGN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 VLDTKYFDMWGGDVA-PFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSIT
: :. :::. :: . :. .:... ....: :::::.:.::..:. : ::: :
CCDS13 VTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKEIR
130 140 150 160 170 180
180 190 200 210 220
pF1KE3 NLGFRDNWVFCGGKGIKTKSPFEQHIKNNKDT--NKYEGWPEVVEMEGCIPQKQD
:. ::..::: ..::.. : .... :..:. :.: ::: ...:::::...
CCDS13 NMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
190 200 210 220 230
>>CCDS42930.1 FAM3B gene_id:54097|Hs108|chr21 (187 aa)
initn: 437 init1: 221 opt: 491 Z-score: 654.9 bits: 128.1 E(32554): 3.7e-30
Smith-Waterman score: 491; 40.7% identity (70.6% similar) in 177 aa overlap (53-226:10-186)
30 40 50 60 70 80
pF1KE3 ISQVFEIKMDASLGNLFARSALDTAARSTKPPRYKCGISKACPEKHFAFKMASGAANVVG
: : :: :: .:... ::..
CCDS42 MRPLAGAPVPKRQKCDHWTPCPSDTYAYRLLSGGGRSKY
10 20 30
90 100 110 120 130 140
pF1KE3 PKICLEDNVLMSGVKNNVGRGINVALANGKTGEVLDTKYFDMWGGDVA-PFIEFLKAIQD
:::.:::.::. .::.::::.:..: ::.: :. :::. :: . :. .:...
CCDS42 AKICFEDNLLMGEQLGNVARGINIAIVNYVTGNVTATRCFDMYEGDNSGPMTKFIQSAAP
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE3 GTIVLMGTYDDGATKLNDEARRLIADLGSTSITNLGFRDNWVFCGGKGIKTKSPFEQHIK
....: :::::.:.::..:. : ::: : :. ::..::: ..::.. : ....
CCDS42 KSLLFMVTYDDGSTRLNNDAKNAIEALGSKEIRNMKFRSSWVFIAAKGLELPSEIQREKI
100 110 120 130 140 150
210 220
pF1KE3 NNKDT--NKYEGWPEVVEMEGCIPQKQD
:..:. :.: ::: ...:::::...
CCDS42 NHSDAKNNRYSGWPAEIQIEGCIPKERS
160 170 180
>>CCDS55543.1 FAM3A gene_id:60343|Hs108|chrX (213 aa)
initn: 739 init1: 433 opt: 440 Z-score: 586.6 bits: 115.7 E(32554): 2.3e-26
Smith-Waterman score: 717; 48.1% identity (76.2% similar) in 231 aa overlap (1-225:1-209)
10 20 30 40 50
pF1KE3 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDASLGNLFAR-SALDTAARS--TKPPR--
::.:: ..:: :. .:. :.: .. .. :. : : . : :. .: : ::
CCDS55 MRLAGPLRIVVLVVSVGVTWIVVSILL-----GGPGSGFPRIQQLFTSPESSVTAAPRAR
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 -YKCGISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTG
::::. . :::.:.::...::::::.::::::::..:::.::.:::::.:.::.:
CCDS55 KYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVN----
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 EVLDTKYFDMWGGDVAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSIT
:: ...:.. ...::.:....::: :::.:.:.:.:...::: .
CCDS55 -------------DVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAK
120 130 140 150
180 190 200 210 220
pF1KE3 NLGFRDNWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQKQD
.:.:::.::: :.::...:::::::.::.: .::::::::..:::::::..
CCDS55 ELAFRDSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGWPEALEMEGCIPRRSTAS
160 170 180 190 200 210
227 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:15:52 2016 done: Mon Nov 7 19:15:52 2016
Total Scan time: 2.020 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]