Result of FASTA (ccds) for
pFN21AE3067
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3067, 222 aa
1>>>pF1KE3067 222 - 222 aa - 222 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9228+/-0.000694; mu= 13.8743+/- 0.042
mean_var=126.2917+/-25.283, 0's: 0 Z-trim(114.5): 56 B-trim: 0 in 0/53
Lambda= 0.114127
statistics sampled from 15016 (15074) to 15016 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.463), width: 16
Scan time: 2.570
The best scores are: opt bits E(32554)
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 1478 253.3 8.8e-68
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 376 71.7 2.8e-13
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 374 71.4 3.5e-13
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 373 71.2 3.9e-13
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 372 71.1 4.5e-13
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 370 70.7 5.5e-13
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 370 70.7 5.6e-13
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 364 69.7 1.1e-12
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 360 69.1 1.7e-12
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 356 68.4 2.7e-12
>>CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 (222 aa)
initn: 1478 init1: 1478 opt: 1478 Z-score: 1330.4 bits: 253.3 E(32554): 8.8e-68
Smith-Waterman score: 1478; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KE3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
130 140 150 160 170 180
190 200 210 220
pF1KE3 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
::::::::::::::::::::::::::::::::::::::::::
CCDS33 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
190 200 210 220
>>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa)
initn: 384 init1: 366 opt: 376 Z-score: 351.8 bits: 71.7 E(32554): 2.8e-13
Smith-Waterman score: 376; 36.4% identity (68.6% similar) in 140 aa overlap (14-153:7-146)
10 20 30 40 50 60
pF1KE3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
: .... : ::: :.. :.:... . ...: ::::::. : :
CCDS41 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
.. . .....: .:: ::.:.::::: :.: ::...:. :. . .: .:. ::
CCDS41 KLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
.:::.: : .:..: :: .:: :. ..:
CCDS41 DEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
120 130 140 150
190 200 210 220
pF1KE3 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 372 init1: 372 opt: 374 Z-score: 350.2 bits: 71.4 E(32554): 3.5e-13
Smith-Waterman score: 374; 38.3% identity (66.7% similar) in 141 aa overlap (13-153:3-143)
10 20 30 40 50 60
pF1KE3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
.. ..::.. :. ::: .. : .:. :.:: ::. .:: ::.:
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
. . . :.: .::: : :.:.:::...:: ::...:. .:. : : .:::.: ::
CCDS43 FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
:::.. : : .:. . :.: :: :.
CCDS43 CDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
190 200 210 220
pF1KE3 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 373 init1: 373 opt: 373 Z-score: 349.2 bits: 71.2 E(32554): 3.9e-13
Smith-Waterman score: 373; 38.3% identity (66.0% similar) in 141 aa overlap (13-153:3-143)
10 20 30 40 50 60
pF1KE3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
.. . ::.. :. ::: .. : .:. :.:: ::. .:: ::.:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
. . . :.: .::: : :.:.:::...:: ::...:. .:. : : .:::.: ::
CCDS36 FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
:::.. : : .:. . ..: :: ::
CCDS36 CDPNPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
190 200 210 220
pF1KE3 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
>>CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 (152 aa)
initn: 379 init1: 365 opt: 372 Z-score: 348.2 bits: 71.1 E(32554): 4.5e-13
Smith-Waterman score: 372; 38.7% identity (66.9% similar) in 142 aa overlap (14-155:6-147)
10 20 30 40 50 60
pF1KE3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
: . ::. : :.: :::. :.: . ..:.: ::. .:. :: :
CCDS31 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
...:.: ...: . :: :.:::.:::: :.::...:: :. : :: :::.:. ::
CCDS31 KLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
:::.. : ..... : . :: :...
CCDS31 SAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI
120 130 140 150
190 200 210 220
pF1KE3 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 368 init1: 368 opt: 370 Z-score: 346.6 bits: 70.7 E(32554): 5.5e-13
Smith-Waterman score: 370; 39.0% identity (64.5% similar) in 141 aa overlap (13-153:3-143)
10 20 30 40 50 60
pF1KE3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
.. . ::.: : ::: .. : .:: :.:: ::. .:: ::.:
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
. . . :.: .::: : :::.:::...:: ::...:. .:. : . .:::.: ::
CCDS54 FLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
:::.. : : .. . :.: :: :.
CCDS54 CDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
190 200 210 220
pF1KE3 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
>>CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX (152 aa)
initn: 378 init1: 360 opt: 370 Z-score: 346.4 bits: 70.7 E(32554): 5.6e-13
Smith-Waterman score: 370; 35.7% identity (67.1% similar) in 140 aa overlap (14-153:7-146)
10 20 30 40 50 60
pF1KE3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
: .... : ::: :.. :.:... ...: ::::::. : :
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
.. . . ...: .:: :..:.::::: :.: ::...:. :. . .: .:. ::
CCDS14 KLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
.:::.: : .:..: :: .:: :. ..:
CCDS14 DEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWRDC
120 130 140 150
190 200 210 220
pF1KE3 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 391 init1: 350 opt: 364 Z-score: 341.3 bits: 69.7 E(32554): 1.1e-12
Smith-Waterman score: 364; 36.9% identity (66.0% similar) in 141 aa overlap (13-153:3-143)
10 20 30 40 50 60
pF1KE3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
.. . ::.. :. ::: .. : .:. :.:: ::. .:: ::.:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
. . . :.: .::: : :.:.:::...:: ::...:. .:. : : .:::.: ::
CCDS36 FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
:::.. : : .:. . ..: .: :.
CCDS36 CDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
190 200 210 220
pF1KE3 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 391 init1: 350 opt: 360 Z-score: 337.6 bits: 69.1 E(32554): 1.7e-12
Smith-Waterman score: 360; 38.2% identity (66.2% similar) in 136 aa overlap (18-153:10-145)
10 20 30 40 50 60
pF1KE3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
::.. :. ::: .. : .:. :.:: ::. .:: ::.:
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
. . . :.: .::: : :.:.:::...:: ::...:. .:. : : .:::.: ::
CCDS36 FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
:::.. : : .:. . ..: .: :.
CCDS36 CDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
190 200 210 220
pF1KE3 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 354 init1: 354 opt: 356 Z-score: 334.1 bits: 68.4 E(32554): 2.7e-12
Smith-Waterman score: 356; 36.9% identity (64.5% similar) in 141 aa overlap (13-153:3-143)
10 20 30 40 50 60
pF1KE3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF
.. . ::.. : ::: .. : .:: :.:: :: . : ::.:
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL
. . . :.: .::: : :::.:::...:: ::...:. .:. : . .:::.: ::
CCDS72 FLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 IHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASST
:::.. : . ... . :.: .:: :.
CCDS72 CDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
190 200 210 220
pF1KE3 DPGAPGGPGGAEGPMAKKHAGERDKKLAAKKKTDKKRALRRL
222 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:20:45 2016 done: Sun Nov 6 05:20:45 2016
Total Scan time: 2.570 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]