FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3058, 213 aa
  1>>>pF1KE3058 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6506+/-0.000766; mu= 12.5882+/- 0.047
 mean_var=67.7703+/-13.536, 0's: 0 Z-trim(108.5): 10  B-trim: 227 in 1/49
 Lambda= 0.155795
 statistics sampled from 10230 (10233) to 10230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.314), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS5087.1 GTF3C6 gene_id:112495|Hs108|chr6        ( 213) 1408 324.8 2.5e-89


>>CCDS5087.1 GTF3C6 gene_id:112495|Hs108|chr6             (213 aa)
 initn: 1408 init1: 1408 opt: 1408  Z-score: 1717.3  bits: 324.8 E(32554): 2.5e-89
Smith-Waterman score: 1408; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE3 MAAAADERSPEDGEDEEEEEQLVLVELSGIIDSDFLSKCENKCKVLGIDTERPILQVDSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MAAAADERSPEDGEDEEEEEQLVLVELSGIIDSDFLSKCENKCKVLGIDTERPILQVDSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VFAGEYEDTLGTCVIFEENVEHADTEGNNKTVLKYKCHTMKKLSMTRTLLTEKKEGEENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VFAGEYEDTLGTCVIFEENVEHADTEGNNKTVLKYKCHTMKKLSMTRTLLTEKKEGEENI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GGVEWLQIKDNDFSYRPNMICNFLHENEDEEVVASAPDKSLELEEEEIQMNDSSNLSCEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 GGVEWLQIKDNDFSYRPNMICNFLHENEDEEVVASAPDKSLELEEEEIQMNDSSNLSCEQ
              130       140       150       160       170       180

              190       200       210   
pF1KE3 EKPMHLEIEDSGPLIDIPSETEGSVFMETQMLP
       :::::::::::::::::::::::::::::::::
CCDS50 EKPMHLEIEDSGPLIDIPSETEGSVFMETQMLP
              190       200       210   




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:04:22 2016 done: Sun Nov  6 06:04:23 2016
 Total Scan time:  2.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]