Result of FASTA (ccds) for
pFN21AE3051
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3051, 193 aa
1>>>pF1KE3051 193 - 193 aa - 193 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9962+/-0.000637; mu= 11.0472+/- 0.039
mean_var=90.8539+/-17.517, 0's: 0 Z-trim(113.2): 61 B-trim: 31 in 1/53
Lambda= 0.134556
statistics sampled from 13779 (13843) to 13779 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.425), width: 16
Scan time: 1.930
The best scores are: opt bits E(32554)
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 1289 259.2 1.1e-69
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 1097 221.9 1.9e-58
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 1057 214.2 4.3e-56
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 998 202.7 9.9e-53
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 878 179.4 1.1e-45
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 670 139.0 1.4e-33
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 663 137.6 3.5e-33
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 663 137.6 3.5e-33
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 661 137.2 4.6e-33
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 659 136.8 6e-33
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 646 134.3 3.5e-32
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 538 113.3 5.9e-26
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 533 112.3 1.2e-25
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 483 102.6 9e-23
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 429 92.2 1.7e-19
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 400 86.6 1e-17
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 398 86.2 1.1e-17
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 395 85.6 1.6e-17
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 363 79.5 1.5e-15
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 337 74.3 4.1e-14
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 331 73.1 7.4e-14
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 330 73.1 1.3e-13
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 325 72.0 2.3e-13
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 324 71.8 2.4e-13
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 313 69.6 8.5e-13
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 310 69.1 1.6e-12
CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 309 68.9 2e-12
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 304 68.0 4.6e-12
CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 302 67.6 5.4e-12
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 294 66.0 1.2e-11
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 293 65.8 1.5e-11
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 290 65.3 2.6e-11
>>CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 (193 aa)
initn: 1289 init1: 1289 opt: 1289 Z-score: 1364.3 bits: 259.2 E(32554): 1.1e-69
Smith-Waterman score: 1289; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KE3 MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH
130 140 150 160 170 180
190
pF1KE3 DRMARQWTKRYAT
:::::::::::::
CCDS26 DRMARQWTKRYAT
190
>>CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 (201 aa)
initn: 1044 init1: 1044 opt: 1097 Z-score: 1162.6 bits: 221.9 E(32554): 1.9e-58
Smith-Waterman score: 1097; 84.5% identity (93.3% similar) in 194 aa overlap (4-193:9-201)
10 20 30 40 50
pF1KE3 MSDDDSRASTSSSSSS----SSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKR
::: .....::.. : .:. :.: :::::.:.: ::.. :::::::
CCDS26 MSTEAQRVDDSPSTSGGSSDGDQRESVQQEPEREQVQPKKKEGKIS-SKTAAKLSTSAKR
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 IQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPP
::::::.::::::::::::::::::::::::::::::::::::::::::::.:.::::::
CCDS26 IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT
120 130 140 150 160 170
180 190
pF1KE3 QYMTNRAEHDRMARQWTKRYAT
::::::::::::::::::::::
CCDS26 QYMTNRAEHDRMARQWTKRYAT
180 190 200
>>CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 (207 aa)
initn: 1036 init1: 1005 opt: 1057 Z-score: 1120.5 bits: 214.2 E(32554): 4.3e-56
Smith-Waterman score: 1057; 79.1% identity (91.0% similar) in 201 aa overlap (2-193:8-207)
10 20 30 40
pF1KE3 MSDDDSRASTSSSSSSSS---------NQQTEKETNTPKKKESKVSMSKNSKLL
:::.: ...:.::.... .:. .: . : .::..:.: ::.. :
CCDS22 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLS-SKTTAKL
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE
::::::::::::.::::::::::::::::::::::::::::::::::::::::::::. .
CCDS22 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSD
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL
120 130 140 150 160 170
170 180 190
pF1KE3 VGSIATQYMTNRAEHDRMARQWTKRYAT
::::::::.::::::::.::::::::::
CCDS22 VGSIATQYLTNRAEHDRIARQWTKRYAT
180 190 200
>>CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 (160 aa)
initn: 998 init1: 998 opt: 998 Z-score: 1060.2 bits: 202.7 E(32554): 9.9e-53
Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 143 aa overlap (51-193:18-160)
30 40 50 60 70 80
pF1KE3 QTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWR
::::::::::::::::::::::::::::::
CCDS56 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWR
10 20 30 40
90 100 110 120 130 140
pF1KE3 STILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 STILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS
50 60 70 80 90 100
150 160 170 180 190
pF1KE3 PALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
110 120 130 140 150 160
>>CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 (176 aa)
initn: 1153 init1: 876 opt: 878 Z-score: 933.7 bits: 179.4 E(32554): 1.1e-45
Smith-Waterman score: 1123; 91.2% identity (91.2% similar) in 193 aa overlap (1-193:1-176)
10 20 30 40 50 60
pF1KE3 MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADIT
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAK----------
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 -------SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY
60 70 80 90 100
130 140 150 160 170 180
pF1KE3 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH
110 120 130 140 150 160
190
pF1KE3 DRMARQWTKRYAT
:::::::::::::
CCDS26 DRMARQWTKRYAT
170
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 670 init1: 670 opt: 670 Z-score: 716.6 bits: 139.0 E(32554): 1.4e-33
Smith-Waterman score: 670; 62.9% identity (85.3% similar) in 143 aa overlap (50-192:4-146)
20 30 40 50 60 70
pF1KE3 QQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW
:::::::.:. ::: .::::: ::....:
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHW
10 20 30
80 90 100 110 120 130
pF1KE3 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
..::.::: :.:.:::::: . : .:::::::..: :.::: ::::.: ::::::...:
CCDS72 QATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
:::::.::::::::::: : :: :::: .:: : ... ...: ::.::..::
CCDS72 SPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
100 110 120 130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 663 init1: 663 opt: 663 Z-score: 709.3 bits: 137.6 E(32554): 3.5e-33
Smith-Waterman score: 663; 65.7% identity (83.9% similar) in 143 aa overlap (50-192:4-146)
20 30 40 50 60 70
pF1KE3 QQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW
:::.::: :.. ::: .::::: ::....:
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHW
10 20 30
80 90 100 110 120 130
pF1KE3 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
..::.:: : :.:::::: : : .::::::::.: ::::: ::::.: ::::::...:
CCDS43 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
::::::::::::::::: : :: :::: :: : :.: ...:.::.::..::
CCDS43 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
100 110 120 130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 663 init1: 663 opt: 663 Z-score: 709.2 bits: 137.6 E(32554): 3.5e-33
Smith-Waterman score: 663; 65.7% identity (84.6% similar) in 143 aa overlap (50-192:4-146)
20 30 40 50 60 70
pF1KE3 QQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW
:::.:::.:.. ::: .::::: ::....:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHW
10 20 30
80 90 100 110 120 130
pF1KE3 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
..::.:: : :.:::::: : : .::::::::.: ::::: ::::.: ::::::...:
CCDS36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
::::::::::::::::: : :: :::: :: : :.: ...:.::.::..::
CCDS36 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML
100 110 120 130 140
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 661 init1: 661 opt: 661 Z-score: 707.2 bits: 137.2 E(32554): 4.6e-33
Smith-Waterman score: 661; 64.3% identity (83.9% similar) in 143 aa overlap (50-192:4-146)
20 30 40 50 60 70
pF1KE3 QQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW
:::::::.:. ::: .::::: ::....:
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHW
10 20 30
80 90 100 110 120 130
pF1KE3 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
..::.:: : :.:::::: : : .::::::::.: :.::: ::::.: ::::::...:
CCDS54 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
:::::.::::::::::: : :: :::: :: : ..: ...:.::.::..::
CCDS54 SPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM
100 110 120 130 140
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 659 init1: 659 opt: 659 Z-score: 705.1 bits: 136.8 E(32554): 6e-33
Smith-Waterman score: 659; 65.0% identity (84.6% similar) in 143 aa overlap (50-192:4-146)
20 30 40 50 60 70
pF1KE3 QQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW
:::.:::.:.. ::: .::::: ::....:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHW
10 20 30
80 90 100 110 120 130
pF1KE3 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
..::.:: : :.:::::: : : .::::::::.: ::::: ::::.: ::::::...:
CCDS36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
::::::::::::::::: : :: :::: :: : :.: ...:..:.::..::
CCDS36 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
100 110 120 130 140
193 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:54:28 2016 done: Sun Nov 6 17:54:28 2016
Total Scan time: 1.930 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]