Result of FASTA (ccds) for
pFN21AE3046
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3046, 185 aa
1>>>pF1KE3046 185 - 185 aa - 185 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3124+/-0.000709; mu= 12.4701+/- 0.043
mean_var=59.6544+/-11.582, 0's: 0 Z-trim(108.6): 54 B-trim: 0 in 0/50
Lambda= 0.166055
statistics sampled from 10251 (10305) to 10251 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.317), width: 16
Scan time: 1.790
The best scores are: opt bits E(32554)
CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 ( 185) 1261 310.0 5.3e-85
CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 ( 161) 1031 254.9 1.8e-68
CCDS63176.1 UBE2F gene_id:140739|Hs108|chr2 ( 164) 1012 250.3 4.3e-67
CCDS63177.1 UBE2F gene_id:140739|Hs108|chr2 ( 153) 797 198.8 1.3e-51
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 398 103.3 9e-23
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 288 76.9 7.2e-15
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 286 76.4 8.9e-15
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 285 76.2 1e-14
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 277 74.2 4e-14
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 275 73.8 5.5e-14
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 273 73.3 7.7e-14
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 272 73.0 9.1e-14
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 270 72.6 1.7e-13
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 261 70.5 7.4e-13
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 253 68.4 1.6e-12
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 253 68.5 2.3e-12
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 254 68.8 2.4e-12
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 249 67.5 3.4e-12
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 249 67.5 4.3e-12
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 247 67.1 6e-12
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 243 66.1 9.2e-12
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 246 66.9 9.4e-12
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 245 66.6 1e-11
CCDS12030.1 CDC34 gene_id:997|Hs108|chr19 ( 236) 240 65.5 2.8e-11
>>CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 (185 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1639.6 bits: 310.0 E(32554): 5.3e-85
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KE3 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 KLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYI
130 140 150 160 170 180
pF1KE3 KRYAR
:::::
CCDS25 KRYAR
>>CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 (161 aa)
initn: 1031 init1: 1031 opt: 1031 Z-score: 1342.7 bits: 254.9 E(32554): 1.8e-68
Smith-Waterman score: 1031; 100.0% identity (100.0% similar) in 146 aa overlap (40-185:16-161)
10 20 30 40 50 60
pF1KE3 RDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV
::::::::::::::::::::::::::::::
CCDS63 MVLGAGPASPVSGSPEVAELEANLPCTCKVHFPDPNKLHCFQLTV
10 20 30 40
70 80 90 100 110 120
pF1KE3 TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR
110 120 130 140 150 160
>>CCDS63176.1 UBE2F gene_id:140739|Hs108|chr2 (164 aa)
initn: 1120 init1: 1010 opt: 1012 Z-score: 1318.0 bits: 250.3 E(32554): 4.3e-67
Smith-Waterman score: 1065; 88.6% identity (88.6% similar) in 185 aa overlap (1-185:1-164)
10 20 30 40 50 60
pF1KE3 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYI
:::::::::::::::::::::::::::: :::::::::::
CCDS63 REHSIDGTGWAPTRTLKDVVWGLNSLFT---------------------EDFRNKVDDYI
130 140 150
pF1KE3 KRYAR
:::::
CCDS63 KRYAR
160
>>CCDS63177.1 UBE2F gene_id:140739|Hs108|chr2 (153 aa)
initn: 797 init1: 797 opt: 797 Z-score: 1040.1 bits: 198.8 E(32554): 1.3e-51
Smith-Waterman score: 953; 82.7% identity (82.7% similar) in 185 aa overlap (1-185:1-153)
10 20 30 40 50 60
pF1KE3 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN
:::::::::::::::::::::::::::::::::::::::
CCDS63 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVK---------------------
10 20 30
70 80 90 100 110 120
pF1KE3 KLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 -----------DEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL
40 50 60 70 80
130 140 150 160 170 180
pF1KE3 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYI
90 100 110 120 130 140
pF1KE3 KRYAR
:::::
CCDS63 KRYAR
150
>>CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 (183 aa)
initn: 336 init1: 296 opt: 398 Z-score: 522.3 bits: 103.3 E(32554): 9e-23
Smith-Waterman score: 398; 38.3% identity (68.3% similar) in 167 aa overlap (15-181:12-169)
10 20 30 40 50 60
pF1KE3 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN
: ..:. .. :....:. . . :.. :: ::: :: . : ::.
CCDS12 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDPD
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL
: :.:.. ::::.:..::: : .: ..: :::::: : ..:::: :..::..:
CCDS12 DLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNIL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYI
:: : :. :......::. :: . : .:::: :::: ... :...:. .
CCDS12 RE------DWKPVLTINSIIYGLQYLFLEP-NPEDPLNKEAAEVLQNNRRLFEQNVQRSM
120 130 140 150 160
pF1KE3 KRYAR
.
CCDS12 RGGYIGSTYFERCLK
170 180
>>CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 (170 aa)
initn: 220 init1: 199 opt: 288 Z-score: 380.4 bits: 76.9 E(32554): 7.2e-15
Smith-Waterman score: 288; 31.4% identity (64.1% similar) in 156 aa overlap (36-182:9-163)
10 20 30 40 50 60
pF1KE3 SKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCF
:: ...:::. : .. . : : :. .
CCDS32 MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRW
10 20 30
70 80 90 100 110 120
pF1KE3 Q-LTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHS
. : . : . :.:: :. . : : . :::.: .:.:::::. ..:..:.:.:.: .
CCDS32 EVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPG
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 IDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKE-DFRNKV
: : : : .:.. .. .. :...: : :.: :..::.. .:.. .:. ::
CCDS32 EDKYGYEKPEERWLPIHTVETIMISVISMLADP-NGDSPANVDAAKEWREDRNGEFKRKV
100 110 120 130 140 150
180
pF1KE3 DDYIKRYAR
...
CCDS32 ARCVRKSQETAFE
160 170
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 225 init1: 169 opt: 286 Z-score: 378.8 bits: 76.4 E(32554): 8.9e-15
Smith-Waterman score: 286; 34.4% identity (62.3% similar) in 151 aa overlap (35-184:4-146)
10 20 30 40 50 60
pF1KE3 ASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHC
: . ::...:. . : :.. : . :
CCDS72 MALKRIQKELSDLQRDPPAHCSAG-PVGDDLFH
10 20 30
70 80 90 100 110 120
pF1KE3 FQLTVT-PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREH
.: :. : .. :::: : . .. : : . :::. :::.::::. .: :::..::
CCDS72 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 SIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY
. :.:. :.. :. .. ::. : : :::: . :. . ::: . .. .. ..:
CCDS72 ----SQWSPALTVSKVLLSICSLLCDP-NPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY
100 110 120 130 140
pF1KE3 AR
:
CCDS72 AM
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 224 init1: 171 opt: 285 Z-score: 377.5 bits: 76.2 E(32554): 1e-14
Smith-Waterman score: 285; 35.1% identity (61.6% similar) in 151 aa overlap (35-184:4-146)
10 20 30 40 50 60
pF1KE3 ASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHC
: . ::...:. . : :.. : . :
CCDS54 MALKRIQKELTDLQRDPPAQCSAG-PVGDDLFH
10 20 30
70 80 90 100 110 120
pF1KE3 FQLTVT-PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREH
.: :. :... :::: : . . : : . :::: :::.::::. .: :::..::
CCDS54 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILR--
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 SIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY
. :.:. :.. :. .. ::. : : :::: : :. . :.: . . .. ..:
CCDS54 ----SQWSPALTVSKVLLSICSLLCDP-NPDDPLVPEIAHTYKADREKYNRLAREWTQKY
100 110 120 130 140
pF1KE3 AR
:
CCDS54 AM
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 214 init1: 168 opt: 277 Z-score: 367.0 bits: 74.2 E(32554): 4e-14
Smith-Waterman score: 277; 33.8% identity (60.3% similar) in 151 aa overlap (35-184:6-148)
10 20 30 40 50 60
pF1KE3 ASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHC
: : ::...: . : :.. : . .
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAG-PVGDDMFH
10 20 30
70 80 90 100 110 120
pF1KE3 FQLTVT-PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREH
.: :. :... :::: : . . : : . :::: :.:.::::. .: :::..::
CCDS36 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 SIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY
. :.:. :.. :. .. ::. : : :::: : :. . :.. . .. ..:
CCDS36 ----SQWSPALTISKVLLSICSLLCDP-NPDDPLVPEIARIYKTDRDKYNRISREWTQKY
100 110 120 130 140
pF1KE3 AR
:
CCDS36 AM
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 220 init1: 168 opt: 275 Z-score: 364.5 bits: 73.8 E(32554): 5.5e-14
Smith-Waterman score: 275; 33.8% identity (60.3% similar) in 151 aa overlap (35-184:4-146)
10 20 30 40 50 60
pF1KE3 ASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHC
: . ::. .: . : :.. : . .
CCDS43 MALKRIHKELNDLARDPPAQCSAG-PVGDDMFH
10 20 30
70 80 90 100 110 120
pF1KE3 FQLTVT-PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREH
.: :. :... :::: : . . : : . :::: :.:.::::. .: :::..::
CCDS43 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 SIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY
. :.:. :.. :. .. ::. : : :::: : :. . :.: . . .. ..:
CCDS43 ----SQWSPALTISKVLLSICSLLCDP-NPDDPLVPEIARIYKTDREKYNRIAREWTQKY
100 110 120 130 140
pF1KE3 AR
:
CCDS43 AM
185 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:57:30 2016 done: Sun Nov 6 17:57:31 2016
Total Scan time: 1.790 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]