FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3043, 183 aa
  1>>>pF1KE3043 183 - 183 aa - 183 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3738+/-0.000623; mu= 18.0175+/- 0.038
 mean_var=56.6339+/-11.939, 0's: 0 Z-trim(110.6): 18  B-trim: 669 in 1/50
 Lambda= 0.170426
 statistics sampled from 11695 (11710) to 11695 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.36), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS2653.1 CMTM6 gene_id:54918|Hs108|chr3          ( 183) 1185 298.7 1.3e-81
CCDS42170.1 CMTM4 gene_id:146223|Hs108|chr16       ( 208)  329 88.2 3.4e-18
CCDS10817.1 CMTM4 gene_id:146223|Hs108|chr16       ( 234)  329 88.3 3.7e-18


>>CCDS2653.1 CMTM6 gene_id:54918|Hs108|chr3               (183 aa)
 initn: 1185 init1: 1185 opt: 1185  Z-score: 1578.4  bits: 298.7 E(32554): 1.3e-81
Smith-Waterman score: 1185; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KE3 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 QCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 SIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEP
              130       140       150       160       170       180

          
pF1KE3 LNA
       :::
CCDS26 LNA
          

>>CCDS42170.1 CMTM4 gene_id:146223|Hs108|chr16            (208 aa)
 initn: 330 init1: 310 opt: 329  Z-score: 440.2  bits: 88.2 E(32554): 3.4e-18
Smith-Waterman score: 329; 35.9% identity (65.7% similar) in 181 aa overlap (1-179:19-193)

                                   10        20        30        40
pF1KE3                   MENGAV--YSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV
                         : .::   :.::::  :   :   .::     . :  : :  
CCDS42 MRSGEELDGFEGEASSTSMISGASSPYQPTTE--PVSQRRGLAGLRCDPDYLRGALGR--
               10        20        30          40        50        

               50        60        70        80        90       100
pF1KE3 LKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTT
       ::  :..:.:.:::: :..  :. : :::::::::::::... ..::..   .. :.   
CCDS42 LKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQI
         60        70        80        90       100       110      

              110       120       130       140       150       160
pF1KE3 KVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKR
       . . .:.  :  .. .:..:::.... . :..:::::..:::.:.  . ..  :.:  ..
CCDS42 NWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVN--TFLAVQK
        120       130       140       150       160         170    

              170       180              
pF1KE3 QESQLRKPENTTRAEALTEPLNA           
        . ..:.  ..   .: ::               
CCDS42 WRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDT
          180       190       200        

>>CCDS10817.1 CMTM4 gene_id:146223|Hs108|chr16            (234 aa)
 initn: 330 init1: 310 opt: 329  Z-score: 439.5  bits: 88.3 E(32554): 3.7e-18
Smith-Waterman score: 329; 35.9% identity (65.7% similar) in 181 aa overlap (1-179:19-193)

                                   10        20        30        40
pF1KE3                   MENGAV--YSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV
                         : .::   :.::::  :   :   .::     . :  : :  
CCDS10 MRSGEELDGFEGEASSTSMISGASSPYQPTTE--PVSQRRGLAGLRCDPDYLRGALGR--
               10        20        30          40        50        

               50        60        70        80        90       100
pF1KE3 LKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTT
       ::  :..:.:.:::: :..  :. : :::::::::::::... ..::..   .. :.   
CCDS10 LKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQI
         60        70        80        90       100       110      

              110       120       130       140       150       160
pF1KE3 KVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKR
       . . .:.  :  .. .:..:::.... . :..:::::..:::.:.  . ..  :.:  ..
CCDS10 NWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVN--TFLAVQK
        120       130       140       150       160         170    

              170       180                                        
pF1KE3 QESQLRKPENTTRAEALTEPLNA                                     
        . ..:.  ..   .: ::                                         
CCDS10 WRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDTFSYSTNVTVRKKSPTNLLSLNHWQLA
          180       190       200       210       220       230    




183 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:52:30 2016 done: Sun Nov  6 17:52:30 2016
 Total Scan time:  1.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]