FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3042, 182 aa
  1>>>pF1KE3042 182 - 182 aa - 182 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2382+/-0.000686; mu= 10.4752+/- 0.042
 mean_var=110.2483+/-21.950, 0's: 0 Z-trim(114.0): 18  B-trim: 0 in 0/52
 Lambda= 0.122149
 statistics sampled from 14589 (14606) to 14589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.449), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS10815.1 CMTM3 gene_id:123920|Hs108|chr16       ( 182) 1227 225.7 1.3e-59
CCDS9598.1 CMTM5 gene_id:116173|Hs108|chr14        ( 156)  336 68.6 2.1e-12


>>CCDS10815.1 CMTM3 gene_id:123920|Hs108|chr16            (182 aa)
 initn: 1227 init1: 1227 opt: 1227  Z-score: 1183.9  bits: 225.7 E(32554): 1.3e-59
Smith-Waterman score: 1227; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KE3 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD
              130       140       150       160       170       180

         
pF1KE3 SD
       ::
CCDS10 SD
         

>>CCDS9598.1 CMTM5 gene_id:116173|Hs108|chr14             (156 aa)
 initn: 204 init1: 204 opt: 336  Z-score: 336.3  bits: 68.6 E(32554): 2.1e-12
Smith-Waterman score: 336; 42.1% identity (73.6% similar) in 140 aa overlap (24-162:17-154)

               10        20        30        40        50        60
pF1KE3 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV
                              :  :...   .::: : :: :: .: .:..: :::..
CCDS95        MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFT
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KE3 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA
       ::  ::...: ::::...: :::  : :  .... . :: .::::::.: .:....:..:
CCDS95 AS-ISAYMAAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAA
             60        70        80        90       100       110  

              130       140       150        160       170         
pF1KE3 IAKYSDGASKAAGVFGFFATIVFATDFYLIF-NDVAKFLKQGDSADETTAHKTEEENSDS
       ...  :::. :: :::.. . .:: : . :. ...:   .:::                 
CCDS95 VTSR-DGAAIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ               
             120       130       140       150                     

     180  
pF1KE3 DSD




182 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:04:43 2016 done: Mon Nov  7 17:04:43 2016
 Total Scan time:  2.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]