Result of FASTA (omim) for
pFN21AE3040
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3040, 177 aa
1>>>pF1KE3040 177 - 177 aa - 177 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6768+/-0.000338; mu= 15.7997+/- 0.021
mean_var=57.8371+/-11.642, 0's: 0 Z-trim(114.5): 41 B-trim: 382 in 1/49
Lambda= 0.168644
statistics sampled from 24416 (24457) to 24416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.287), width: 16
Scan time: 5.420
The best scores are: opt bits E(85289)
NP_937818 (OMIM: 156490,256700) nucleoside diphosp ( 177) 1204 300.8 7.7e-82
NP_000260 (OMIM: 156490,256700) nucleoside diphosp ( 152) 1038 260.3 9.8e-70
NP_001018148 (OMIM: 156491) nucleoside diphosphate ( 152) 928 233.6 1.1e-61
NP_002503 (OMIM: 156491) nucleoside diphosphate ki ( 152) 928 233.6 1.1e-61
NP_001018147 (OMIM: 156491) nucleoside diphosphate ( 152) 928 233.6 1.1e-61
NP_001018149 (OMIM: 156491) nucleoside diphosphate ( 152) 928 233.6 1.1e-61
NP_002504 (OMIM: 601817) nucleoside diphosphate ki ( 169) 726 184.5 7.6e-47
NP_005000 (OMIM: 601818) nucleoside diphosphate ki ( 187) 621 158.9 4e-39
XP_005255389 (OMIM: 601817) PREDICTED: nucleoside ( 165) 553 142.4 3.5e-34
NP_001273364 (OMIM: 601818) nucleoside diphosphate ( 173) 490 127.0 1.5e-29
NP_001273367 (OMIM: 601818) nucleoside diphosphate ( 117) 452 117.7 6.6e-27
NP_001273369 (OMIM: 601818) nucleoside diphosphate ( 117) 452 117.7 6.6e-27
NP_001273368 (OMIM: 601818) nucleoside diphosphate ( 117) 452 117.7 6.6e-27
NP_001273365 (OMIM: 601818) nucleoside diphosphate ( 117) 452 117.7 6.6e-27
NP_001185611 (OMIM: 156491) nucleoside diphosphate ( 82) 439 114.4 4.5e-26
XP_011520805 (OMIM: 601817) PREDICTED: nucleoside ( 170) 332 88.6 5.5e-18
NP_001273362 (OMIM: 601818) nucleoside diphosphate ( 153) 289 78.1 7.1e-15
NP_932076 (OMIM: 613465) nucleoside diphosphate ki ( 340) 245 67.6 2.2e-11
XP_016856588 (OMIM: 613465) PREDICTED: nucleoside ( 367) 245 67.7 2.4e-11
NP_037462 (OMIM: 613465) nucleoside diphosphate ki ( 376) 245 67.7 2.4e-11
NP_001295356 (OMIM: 608294) nucleoside diphosphate ( 186) 223 62.1 5.7e-10
NP_001295355 (OMIM: 608294) nucleoside diphosphate ( 186) 223 62.1 5.7e-10
XP_016861003 (OMIM: 608294) PREDICTED: nucleoside ( 186) 223 62.1 5.7e-10
NP_001295357 (OMIM: 608294) nucleoside diphosphate ( 186) 223 62.1 5.7e-10
XP_016861002 (OMIM: 608294) PREDICTED: nucleoside ( 190) 223 62.1 5.7e-10
NP_005784 (OMIM: 608294) nucleoside diphosphate ki ( 194) 223 62.1 5.8e-10
XP_006714779 (OMIM: 603575) PREDICTED: nucleoside ( 149) 216 60.3 1.5e-09
XP_005272156 (OMIM: 603575) PREDICTED: nucleoside ( 148) 215 60.1 1.8e-09
NP_003542 (OMIM: 603575) nucleoside diphosphate ki ( 212) 215 60.2 2.4e-09
XP_016865434 (OMIM: 603575) PREDICTED: nucleoside ( 278) 215 60.3 3e-09
XP_011520806 (OMIM: 601817) PREDICTED: nucleoside ( 136) 198 55.9 3e-08
NP_001295363 (OMIM: 608294) nucleoside diphosphate ( 141) 185 52.8 2.8e-07
XP_016856589 (OMIM: 613465) PREDICTED: nucleoside ( 252) 164 47.8 1.5e-05
XP_005245163 (OMIM: 613465) PREDICTED: nucleoside ( 252) 164 47.8 1.5e-05
XP_016861007 (OMIM: 608294) PREDICTED: nucleoside ( 111) 152 44.7 6e-05
XP_016861001 (OMIM: 608294) PREDICTED: nucleoside ( 264) 147 43.7 0.00027
XP_016861006 (OMIM: 608294) PREDICTED: nucleoside ( 114) 142 42.3 0.00033
>>NP_937818 (OMIM: 156490,256700) nucleoside diphosphate (177 aa)
initn: 1204 init1: 1204 opt: 1204 Z-score: 1590.3 bits: 300.8 E(85289): 7.7e-82
Smith-Waterman score: 1204; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
130 140 150 160 170
>>NP_000260 (OMIM: 156490,256700) nucleoside diphosphate (152 aa)
initn: 1038 init1: 1038 opt: 1038 Z-score: 1372.9 bits: 260.3 E(85289): 9.8e-70
Smith-Waterman score: 1038; 100.0% identity (100.0% similar) in 152 aa overlap (26-177:1-152)
10 20 30 40 50 60
pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
:::::::::::::::::::::::::::::::::::
NP_000 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
10 20 30
70 80 90 100 110 120
pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
100 110 120 130 140 150
>>NP_001018148 (OMIM: 156491) nucleoside diphosphate kin (152 aa)
initn: 928 init1: 928 opt: 928 Z-score: 1228.3 bits: 233.6 E(85289): 1.1e-61
Smith-Waterman score: 928; 88.2% identity (97.4% similar) in 152 aa overlap (26-177:1-152)
10 20 30 40 50 60
pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
::: :::::::::::::::::::::::::::::::
NP_001 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
10 20 30
70 80 90 100 110 120
pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
:..::..:::. ::.::.:::::::: ::::::.::::::::::::::::::::::::::
NP_001 VAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETN
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
::::::::::::::::::::::::::::.::::::.:::.::::::: :::..:.::
NP_001 PADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
100 110 120 130 140 150
>>NP_002503 (OMIM: 156491) nucleoside diphosphate kinase (152 aa)
initn: 928 init1: 928 opt: 928 Z-score: 1228.3 bits: 233.6 E(85289): 1.1e-61
Smith-Waterman score: 928; 88.2% identity (97.4% similar) in 152 aa overlap (26-177:1-152)
10 20 30 40 50 60
pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
::: :::::::::::::::::::::::::::::::
NP_002 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
10 20 30
70 80 90 100 110 120
pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
:..::..:::. ::.::.:::::::: ::::::.::::::::::::::::::::::::::
NP_002 VAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETN
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
::::::::::::::::::::::::::::.::::::.:::.::::::: :::..:.::
NP_002 PADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
100 110 120 130 140 150
>>NP_001018147 (OMIM: 156491) nucleoside diphosphate kin (152 aa)
initn: 928 init1: 928 opt: 928 Z-score: 1228.3 bits: 233.6 E(85289): 1.1e-61
Smith-Waterman score: 928; 88.2% identity (97.4% similar) in 152 aa overlap (26-177:1-152)
10 20 30 40 50 60
pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
::: :::::::::::::::::::::::::::::::
NP_001 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
10 20 30
70 80 90 100 110 120
pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
:..::..:::. ::.::.:::::::: ::::::.::::::::::::::::::::::::::
NP_001 VAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETN
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
::::::::::::::::::::::::::::.::::::.:::.::::::: :::..:.::
NP_001 PADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
100 110 120 130 140 150
>>NP_001018149 (OMIM: 156491) nucleoside diphosphate kin (152 aa)
initn: 928 init1: 928 opt: 928 Z-score: 1228.3 bits: 233.6 E(85289): 1.1e-61
Smith-Waterman score: 928; 88.2% identity (97.4% similar) in 152 aa overlap (26-177:1-152)
10 20 30 40 50 60
pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
::: :::::::::::::::::::::::::::::::
NP_001 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
10 20 30
70 80 90 100 110 120
pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
:..::..:::. ::.::.:::::::: ::::::.::::::::::::::::::::::::::
NP_001 VAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETN
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
::::::::::::::::::::::::::::.::::::.:::.::::::: :::..:.::
NP_001 PADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
100 110 120 130 140 150
>>NP_002504 (OMIM: 601817) nucleoside diphosphate kinase (169 aa)
initn: 726 init1: 726 opt: 726 Z-score: 962.0 bits: 184.5 E(85289): 7.6e-47
Smith-Waterman score: 726; 67.6% identity (93.2% similar) in 148 aa overlap (30-177:22-169)
10 20 30 40 50 60
pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
::::.:.::::::: :::::..:::.:::.:
NP_002 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKL
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
:.::..::::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: ::
NP_002 VALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATN
60 70 80 90 100 110
130 140 150 160 170
pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
:::. ::::::::::.::.:.::::::::::..::.:::. .::. . . : .:.::
NP_002 PADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
120 130 140 150 160
>>NP_005000 (OMIM: 601818) nucleoside diphosphate kinase (187 aa)
initn: 636 init1: 621 opt: 621 Z-score: 823.4 bits: 158.9 E(85289): 4e-39
Smith-Waterman score: 621; 58.3% identity (88.9% similar) in 144 aa overlap (30-173:38-181)
10 20 30 40 50
pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
:::..:.::::::: :::..:.:::..::
NP_005 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET
:::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.:
NP_005 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 NPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
. :.. :::::::: ....::.::.:::::.:..:: :::. :::.... .:.
NP_005 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
130 140 150 160 170 180
>>XP_005255389 (OMIM: 601817) PREDICTED: nucleoside diph (165 aa)
initn: 553 init1: 553 opt: 553 Z-score: 734.7 bits: 142.4 E(85289): 3.5e-34
Smith-Waterman score: 553; 71.0% identity (95.3% similar) in 107 aa overlap (30-136:22-128)
10 20 30 40 50 60
pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
::::.:.::::::: :::::..:::.:::.:
XP_005 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKL
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
:.::..::::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: ::
XP_005 VALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATN
60 70 80 90 100 110
130 140 150 160 170
pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
:::. ::::::::::.
XP_005 PADAPPGTIRGDFCIEEPDSRQRLGGECPPRDRSLVPRRRAPLLGGQRWALAV
120 130 140 150 160
>>NP_001273364 (OMIM: 601818) nucleoside diphosphate kin (173 aa)
initn: 505 init1: 490 opt: 490 Z-score: 651.6 bits: 127.0 E(85289): 1.5e-29
Smith-Waterman score: 490; 60.2% identity (88.9% similar) in 108 aa overlap (30-137:38-145)
10 20 30 40 50
pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
:::..:.::::::: :::..:.:::..::
NP_001 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET
:::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.:
NP_001 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 NPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
. :.. :::::::: ...
NP_001 DSAEAAPGTIRGDFSVHISSHRLAPLDRGQREQQMVPGIPQGAHEA
130 140 150 160 170
177 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:23:36 2016 done: Thu Nov 3 19:23:36 2016
Total Scan time: 5.420 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]