FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3039, 175 aa
  1>>>pF1KE3039 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2422+/-0.000709; mu= 13.9588+/- 0.043
 mean_var=67.0326+/-13.896, 0's: 0 Z-trim(109.3): 22  B-trim: 0 in 0/50
 Lambda= 0.156650
 statistics sampled from 10760 (10780) to 10760 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.331), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS33730.1 CMTM7 gene_id:112616|Hs108|chr3        ( 175) 1129 263.2 5.8e-71
CCDS33731.1 CMTM7 gene_id:112616|Hs108|chr3        ( 142)  734 173.9 3.7e-44


>>CCDS33730.1 CMTM7 gene_id:112616|Hs108|chr3             (175 aa)
 initn: 1129 init1: 1129 opt: 1129  Z-score: 1387.5  bits: 263.2 E(32554): 5.8e-71
Smith-Waterman score: 1129; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KE3 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV
              130       140       150       160       170     

>>CCDS33731.1 CMTM7 gene_id:112616|Hs108|chr3             (142 aa)
 initn: 732 init1: 732 opt: 734  Z-score: 906.3  bits: 173.9 E(32554): 3.7e-44
Smith-Waterman score: 862; 81.1% identity (81.1% similar) in 175 aa overlap (1-175:1-142)

               10        20        30        40        50        60
pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
CCDS33 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLS---------
               70        80        90       100       110          

              130       140       150       160       170     
pF1KE3 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV
                               :::::::::::::::::::::::::::::::
CCDS33 ------------------------IFGFMATFLCMASIWLSYKISCVTQSTDAAV
                                     120       130       140  




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:17:51 2016 done: Sun Nov  6 02:17:51 2016
 Total Scan time:  1.760 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]