Result of FASTA (ccds) for
pFN21AE3038
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3038, 173 aa
1>>>pF1KE3038 173 - 173 aa - 173 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8378+/-0.000994; mu= 14.7250+/- 0.060
mean_var=58.1726+/-11.947, 0's: 0 Z-trim(103.5): 31 B-trim: 0 in 0/50
Lambda= 0.168157
statistics sampled from 7418 (7436) to 7418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.228), width: 16
Scan time: 1.770
The best scores are: opt bits E(32554)
CCDS2652.1 CMTM8 gene_id:152189|Hs108|chr3 ( 173) 1116 279.0 1e-75
CCDS82753.1 CMTM8 gene_id:152189|Hs108|chr3 ( 115) 445 116.1 7.5e-27
CCDS10777.1 PLLP gene_id:51090|Hs108|chr16 ( 182) 409 107.4 4.6e-24
CCDS2085.1 MALL gene_id:7851|Hs108|chr2 ( 153) 228 63.5 6.6e-11
CCDS2006.1 MAL gene_id:4118|Hs108|chr2 ( 153) 227 63.2 7.9e-11
>>CCDS2652.1 CMTM8 gene_id:152189|Hs108|chr3 (173 aa)
initn: 1116 init1: 1116 opt: 1116 Z-score: 1472.7 bits: 279.0 E(32554): 1e-75
Smith-Waterman score: 1116; 98.8% identity (98.8% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KE3 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLHGFLIVAEIVLGLLVWTLIA
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS26 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLPGFLIVAEIVLGLLVWTLIA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GTEYFRVPAFGWVMFVAVSYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS26 GTEYFRVPAFGWVMFVAVFYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 SAAVVDASSVSPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SAAVVDASSVSPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ
130 140 150 160 170
>>CCDS82753.1 CMTM8 gene_id:152189|Hs108|chr3 (115 aa)
initn: 464 init1: 445 opt: 445 Z-score: 595.6 bits: 116.1 E(32554): 7.5e-27
Smith-Waterman score: 606; 65.9% identity (65.9% similar) in 173 aa overlap (1-173:1-115)
10 20 30 40 50 60
pF1KE3 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLHGFLIVAEIVLGLLVWTLIA
:::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS82 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLPGFLIVAEI-----------
10 20 30 40
70 80 90 100 110 120
pF1KE3 GTEYFRVPAFGWVMFVAVSYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL
:::::::::::::
CCDS82 -----------------------------------------------GLCFNGSAFVLYL
50 60
130 140 150 160 170
pF1KE3 SAAVVDASSVSPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SAAVVDASSVSPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ
70 80 90 100 110
>>CCDS10777.1 PLLP gene_id:51090|Hs108|chr16 (182 aa)
initn: 259 init1: 259 opt: 409 Z-score: 545.4 bits: 107.4 E(32554): 4.6e-24
Smith-Waterman score: 409; 42.1% identity (71.1% similar) in 159 aa overlap (12-168:8-166)
10 20 30 40 50 60
pF1KE3 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLHGFLIVAEIVLGLLVWTLIA
:.: .:: :.. .: :.. : :.:. : :.. ..:::::::.:::
CCDS10 MAEFPSKVSTRTSSPAQGAEASVSALRPDLGFVRSRLGALMLLQLVLGLLVWALIA
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 GTEYFRVPAFGWVMFVAVSYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL
: : ::.:::::::: :..:. .. .:. . . .. .::: : . :: :: :::.
CCDS10 DTPYHLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYI
60 70 80 90 100 110
130 140 150 160 170
pF1KE3 SAAVVDASSV--SPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ
.: .. ...: . : .. .:. ::.:::: :: : :. ...::. :::
CCDS10 TAFIACSAAVDLTSLRGTRPYNQRAAASFFACLVMIAYGVSAFFSYQAWRGVGSNAATSQ
120 130 140 150 160 170
CCDS10 MAGGYA
180
>>CCDS2085.1 MALL gene_id:7851|Hs108|chr2 (153 aa)
initn: 194 init1: 136 opt: 228 Z-score: 309.2 bits: 63.5 E(32554): 6.6e-11
Smith-Waterman score: 228; 33.9% identity (67.7% similar) in 124 aa overlap (36-156:23-143)
10 20 30 40 50 60
pF1KE3 RARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLHGFLIVAEIVLGLLVWTLIAGTEYF
:: .:.. :...:.::::..:.:.
CCDS20 MASPDPPATSYAPSDVPSGVALFLTIPFAFFL-PELIFGFLVWTMVAATHIV
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RVPAFGWVMFVAVSYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYLSAAV-
::::.:... ......::. :. : :. . : .. ..:.. .::.::::
CCDS20 YPLLQGWVMYVSLTSFLISLMFLLSYLFGFYKRFES--WRVLDSLYHGTTGILYMSAAVL
60 70 80 90 100
130 140 150 160 170
pF1KE3 -VDASSVSPER-DSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ
: :. :: . : . . .:.:::::..:. :
CCDS20 QVHATIVSEKLLDPRIYYINSAASFFAFIATLLYILHAFSIYYH
110 120 130 140 150
>>CCDS2006.1 MAL gene_id:4118|Hs108|chr2 (153 aa)
initn: 161 init1: 125 opt: 227 Z-score: 307.9 bits: 63.2 E(32554): 7.9e-11
Smith-Waterman score: 227; 28.9% identity (65.1% similar) in 149 aa overlap (24-169:6-152)
10 20 30 40 50 60
pF1KE3 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLHGFLIVAEIVLGLLVWTLIA
.:..:.. . :: .:.. :...: ::: :.:
CCDS20 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVA
10 20 30 40
70 80 90 100 110 120
pF1KE3 GTEYFRVPAFGWVMFVAVSYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL
.. . ::::::.: .: :. ..:.:: .. .. :.:. .. .: ..::
CCDS20 SSLVPWPLVQGWVMFVSVFCFVATTTLIILYIIGAHG--GETSWVTLDAAYHCTAALFYL
50 60 70 80 90 100
130 140 150 160 170
pF1KE3 SAAVVDASSVSPERDSHNFNSW---AASSFFAFLVTICYAGNTYFSFIAWRSRTIQ
::.:..: .. .:. .. . :. :....:. :. .. ::.: :.:
CCDS20 SASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
110 120 130 140 150
173 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:20:40 2016 done: Sun Nov 6 02:20:40 2016
Total Scan time: 1.770 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]