FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3037, 169 aa
  1>>>pF1KE3037 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3332+/-0.000735; mu= 11.7809+/- 0.044
 mean_var=58.6373+/-11.606, 0's: 0 Z-trim(108.1): 15  B-trim: 0 in 0/50
 Lambda= 0.167489
 statistics sampled from 10009 (10017) to 10009 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.308), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS5241.1 VIP gene_id:7432|Hs108|chr6             ( 169) 1089 271.0 2.4e-73
CCDS5240.1 VIP gene_id:7432|Hs108|chr6             ( 170) 1077 268.1 1.8e-72


>>CCDS5241.1 VIP gene_id:7432|Hs108|chr6                  (169 aa)
 initn: 1089 init1: 1089 opt: 1089  Z-score: 1430.2  bits: 271.0 E(32554): 2.4e-73
Smith-Waterman score: 1089; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE3 MDTRNKAQLLVLLTLLSVLFSQTSAWPLYRAPSALRLGDRIPFEGANEPDQVSLKEDIDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MDTRNKAQLLVLLTLLSVLFSQTSAWPLYRAPSALRLGDRIPFEGANEPDQVSLKEDIDM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESLMGKRVSNISEDPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESLMGKRVSNISEDPVP
               70        80        90       100       110       120

              130       140       150       160         
pF1KE3 VKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEELEK
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEELEK
              130       140       150       160         

>>CCDS5240.1 VIP gene_id:7432|Hs108|chr6                  (170 aa)
 initn: 835 init1: 718 opt: 1077  Z-score: 1414.5  bits: 268.1 E(32554): 1.8e-72
Smith-Waterman score: 1077; 99.4% identity (99.4% similar) in 170 aa overlap (1-169:1-170)

               10        20        30        40        50        60
pF1KE3 MDTRNKAQLLVLLTLLSVLFSQTSAWPLYRAPSALRLGDRIPFEGANEPDQVSLKEDIDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MDTRNKAQLLVLLTLLSVLFSQTSAWPLYRAPSALRLGDRIPFEGANEPDQVSLKEDIDM
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE3 LQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESLMGKRVS-NISEDPV
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS52 LQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESLMGKRVSSNISEDPV
               70        80        90       100       110       120

     120       130       140       150       160         
pF1KE3 PVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEELEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 PVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEELEK
              130       140       150       160       170




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:56:17 2016 done: Sun Nov  6 04:56:17 2016
 Total Scan time:  1.950 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]