FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3036, 169 aa
  1>>>pF1KE3036 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3599+/-0.000813; mu= 12.3927+/- 0.048
 mean_var=83.8891+/-16.219, 0's: 0 Z-trim(109.0): 57  B-trim: 14 in 1/49
 Lambda= 0.140030
 statistics sampled from 10510 (10564) to 10510 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.325), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS3564.1 EREG gene_id:2069|Hs108|chr4            ( 169) 1160 243.5 4.5e-65


>>CCDS3564.1 EREG gene_id:2069|Hs108|chr4                 (169 aa)
 initn: 1160 init1: 1160 opt: 1160  Z-score: 1281.7  bits: 243.5 E(32554): 4.5e-65
Smith-Waterman score: 1160; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE3 MTAGRRMEMLCAGRVPALLLCLGFHLLQAVLSTTVIPSCIPGESSDNCTALVQTEDNPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MTAGRRMEMLCAGRVPALLLCLGFHLLQAVLSTTVIPSCIPGESSDNCTALVQTEDNPRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 AQVSITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHFFLTVHQPLSKEYVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AQVSITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHFFLTVHQPLSKEYVA
               70        80        90       100       110       120

              130       140       150       160         
pF1KE3 LTVILIILFLITVVGSTYYFCRWYRNRKSKEPKKEYERVTSGDPELPQV
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LTVILIILFLITVVGSTYYFCRWYRNRKSKEPKKEYERVTSGDPELPQV
              130       140       150       160         




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:52:55 2016 done: Sat Nov  5 22:52:56 2016
 Total Scan time:  1.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]