FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3034, 166 aa
  1>>>pF1KE3034 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3280+/-0.00069; mu= 12.2134+/- 0.042
 mean_var=63.3894+/-12.573, 0's: 0 Z-trim(109.1): 13  B-trim: 0 in 0/51
 Lambda= 0.161089
 statistics sampled from 10643 (10645) to 10643 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.327), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS8007.1 SDHAF2 gene_id:54949|Hs108|chr11        ( 166) 1095 262.5 8.5e-71


>>CCDS8007.1 SDHAF2 gene_id:54949|Hs108|chr11             (166 aa)
 initn: 1095 init1: 1095 opt: 1095  Z-score: 1384.5  bits: 262.5 E(32554): 8.5e-71
Smith-Waterman score: 1095; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE3 MAVSTVFSTSSLMLALSRHSLLSPLLSVTSFRRFYRGDSPTDSQKDMIEIPLPPWQERTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MAVSTVFSTSSLMLALSRHSLLSPLLSVTSFRRFYRGDSPTDSQKDMIEIPLPPWQERTD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMTEKQLNLYDRLINEPSNDWDIYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 ESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMTEKQLNLYDRLINEPSNDWDIYY
               70        80        90       100       110       120

              130       140       150       160      
pF1KE3 WATEAKPAPEIFENEVMALLRDFAKNKNKEQRLRAPDLEYLFEKPR
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 WATEAKPAPEIFENEVMALLRDFAKNKNKEQRLRAPDLEYLFEKPR
              130       140       150       160      




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:10:46 2016 done: Sun Nov  6 15:10:47 2016
 Total Scan time:  1.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]