FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3032, 161 aa
  1>>>pF1KE3032 161 - 161 aa - 161 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8663+/-0.000723; mu= 14.4950+/- 0.044
 mean_var=59.7650+/-11.597, 0's: 0 Z-trim(108.9): 47  B-trim: 0 in 0/51
 Lambda= 0.165902
 statistics sampled from 10506 (10553) to 10506 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.324), width:  16
 Scan time:  1.910

The best scores are:                                      opt bits E(32554)
CCDS47189.1 UBE2QL1 gene_id:134111|Hs108|chr5      ( 161) 1079 266.0 7.2e-72
CCDS1069.1 UBE2Q1 gene_id:55585|Hs108|chr1         ( 422)  605 152.8 2.2e-37
CCDS66839.1 UBE2Q2 gene_id:92912|Hs108|chr15       ( 340)  566 143.4 1.2e-34
CCDS45309.1 UBE2Q2 gene_id:92912|Hs108|chr15       ( 359)  566 143.4 1.3e-34
CCDS10286.1 UBE2Q2 gene_id:92912|Hs108|chr15       ( 375)  566 143.4 1.3e-34


>>CCDS47189.1 UBE2QL1 gene_id:134111|Hs108|chr5           (161 aa)
 initn: 1079 init1: 1079 opt: 1079  Z-score: 1403.8  bits: 266.0 E(32554): 7.2e-72
Smith-Waterman score: 1079; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE3 MKELQDIARLSDRFISVELVDESLFDWNVKLHQVDKDSVLWQDMKETNTEFILLNLTFPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MKELQDIARLSDRFISVELVDESLFDWNVKLHQVDKDSVLWQDMKETNTEFILLNLTFPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 NFPFSPPFMRVLSPRLENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NFPFSPPFMRVLSPRLENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGR
               70        80        90       100       110       120

              130       140       150       160 
pF1KE3 ICRKAGKSKKSFSRKEAEATFKSLVKTHEKYGWVTPPVSDG
       :::::::::::::::::::::::::::::::::::::::::
CCDS47 ICRKAGKSKKSFSRKEAEATFKSLVKTHEKYGWVTPPVSDG
              130       140       150       160 

>>CCDS1069.1 UBE2Q1 gene_id:55585|Hs108|chr1              (422 aa)
 initn: 514 init1: 371 opt: 605  Z-score: 784.6  bits: 152.8 E(32554): 2.2e-37
Smith-Waterman score: 605; 56.2% identity (80.5% similar) in 169 aa overlap (1-161:257-422)

                                             10            20      
pF1KE3                               MKELQDIARLSDRF----ISVELVDESLFD
                                     ::::.:: : :. :     .::::..::.:
CCDS10 LAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYR-SQSFKGGNYAVELVNDSLYD
        230       240       250       260        270       280     

         30        40            50        60        70        80  
pF1KE3 WNVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVL
       ::::: .::.::.: .:..    . ...:::::..: :::::.:::.::.:: : .::::
CCDS10 WNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVL
         290       300       310       320       330       340     

             90       100       110       120       130       140  
pF1KE3 DGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFK
        :::::::::: .::::::..:.:. :..:.::::..:.   :.::. :..:  :. ..:
CCDS10 GGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKSQYSLTR--AQQSYK
         350       360       370       380       390         400   

            150       160 
pF1KE3 SLVKTHEKYGWVTPPVSDG
       :::. ::: :: :::  ::
CCDS10 SLVQIHEKNGWYTPPKEDG
           410       420  

>>CCDS66839.1 UBE2Q2 gene_id:92912|Hs108|chr15            (340 aa)
 initn: 590 init1: 326 opt: 566  Z-score: 735.5  bits: 143.4 E(32554): 1.2e-34
Smith-Waterman score: 566; 50.6% identity (78.6% similar) in 168 aa overlap (1-161:175-340)

                                             10           20       
pF1KE3                               MKELQDIARLSDR---FISVELVDESLFDW
                                     ::::.:: : ..    . ::::...::.::
CCDS66 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW
          150       160       170       180       190       200    

        30        40            50        60        70        80   
pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD
       .:::..:: :: : .:..    . . :.::::..: :::::.:::.::. : : .:::: 
CCDS66 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG
          210       220       230       240       250       260    

            90       100       110       120       130       140   
pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS
       :::.:::::: .::::::..:.:. :. :.::::..:.  . : .:....  .:. ...:
CCDS66 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNS
          270       280       290       300         310       320  

           150       160 
pF1KE3 LVKTHEKYGWVTPPVSDG
       .:. ::: :: :::  ::
CCDS66 IVQIHEKNGWYTPPKEDG
            330       340

>>CCDS45309.1 UBE2Q2 gene_id:92912|Hs108|chr15            (359 aa)
 initn: 590 init1: 326 opt: 566  Z-score: 735.1  bits: 143.4 E(32554): 1.3e-34
Smith-Waterman score: 566; 50.6% identity (78.6% similar) in 168 aa overlap (1-161:194-359)

                                             10           20       
pF1KE3                               MKELQDIARLSDR---FISVELVDESLFDW
                                     ::::.:: : ..    . ::::...::.::
CCDS45 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW
           170       180       190       200       210       220   

        30        40            50        60        70        80   
pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD
       .:::..:: :: : .:..    . . :.::::..: :::::.:::.::. : : .:::: 
CCDS45 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG
           230       240       250       260       270       280   

            90       100       110       120       130       140   
pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS
       :::.:::::: .::::::..:.:. :. :.::::..:.  . : .:....  .:. ...:
CCDS45 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNS
           290       300       310       320         330       340 

           150       160 
pF1KE3 LVKTHEKYGWVTPPVSDG
       .:. ::: :: :::  ::
CCDS45 IVQIHEKNGWYTPPKEDG
             350         

>>CCDS10286.1 UBE2Q2 gene_id:92912|Hs108|chr15            (375 aa)
 initn: 590 init1: 326 opt: 566  Z-score: 734.9  bits: 143.4 E(32554): 1.3e-34
Smith-Waterman score: 566; 50.6% identity (78.6% similar) in 168 aa overlap (1-161:210-375)

                                             10           20       
pF1KE3                               MKELQDIARLSDR---FISVELVDESLFDW
                                     ::::.:: : ..    . ::::...::.::
CCDS10 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW
     180       190       200       210       220       230         

        30        40            50        60        70        80   
pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD
       .:::..:: :: : .:..    . . :.::::..: :::::.:::.::. : : .:::: 
CCDS10 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG
     240       250       260       270       280       290         

            90       100       110       120       130       140   
pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS
       :::.:::::: .::::::..:.:. :. :.::::..:.  . : .:....  .:. ...:
CCDS10 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNS
     300       310       320       330         340       350       

           150       160 
pF1KE3 LVKTHEKYGWVTPPVSDG
       .:. ::: :: :::  ::
CCDS10 IVQIHEKNGWYTPPKEDG
       360       370     




161 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 14:40:00 2016 done: Mon Nov  7 14:40:00 2016
 Total Scan time:  1.910 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]