FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3024, 141 aa
  1>>>pF1KE3024 141 - 141 aa - 141 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3383+/-0.000581; mu= 11.9631+/- 0.035
 mean_var=64.8622+/-12.912, 0's: 0 Z-trim(112.5): 5  B-trim: 0 in 0/52
 Lambda= 0.159250
 statistics sampled from 13289 (13292) to 13289 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.408), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS7819.1 CALCA gene_id:796|Hs108|chr11           ( 141)  928 220.8 2.2e-58
CCDS31432.1 CALCA gene_id:796|Hs108|chr11          ( 128)  489 119.9 4.7e-28
CCDS7820.1 CALCB gene_id:797|Hs108|chr11           ( 127)  435 107.5 2.5e-24


>>CCDS7819.1 CALCA gene_id:796|Hs108|chr11                (141 aa)
 initn: 928 init1: 928 opt: 928  Z-score: 1161.6  bits: 220.8 E(32554): 2.2e-58
Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE3 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 MKASELEQEQEREGSSLDSPRSKRCGNLSTCMLGTYTQDFNKFHTFPQTAIGVGAPGKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MKASELEQEQEREGSSLDSPRSKRCGNLSTCMLGTYTQDFNKFHTFPQTAIGVGAPGKKR
               70        80        90       100       110       120

              130       140 
pF1KE3 DMSSDLERDHRPHVSMPQNAN
       :::::::::::::::::::::
CCDS78 DMSSDLERDHRPHVSMPQNAN
              130       140 

>>CCDS31432.1 CALCA gene_id:796|Hs108|chr11               (128 aa)
 initn: 491 init1: 466 opt: 489  Z-score: 617.1  bits: 119.9 E(32554): 4.7e-28
Smith-Waterman score: 489; 68.0% identity (80.0% similar) in 125 aa overlap (1-120:1-123)

               10        20        30        40        50        60
pF1KE3 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ
               10        20        30        40        50        60

               70        80        90       100            110     
pF1KE3 MKASELEQEQEREGSSLDSPRSKRCGNLSTCMLGTYTQDFNKF-----HTFPQTAIGVGA
       ::::::::::::::: . .  .::  . .::.    .  ...      ..:  : .:  :
CCDS31 MKASELEQEQEREGSRIIA--QKRACDTATCVTHRLAGLLSRSGGVVKNNFVPTNVGSKA
               70          80        90       100       110        

         120       130       140 
pF1KE3 PGKKRDMSSDLERDHRPHVSMPQNAN
        :..:                     
CCDS31 FGRRRRDLQA                
      120                        

>>CCDS7820.1 CALCB gene_id:797|Hs108|chr11                (127 aa)
 initn: 258 init1: 220 opt: 435  Z-score: 550.1  bits: 107.5 E(32554): 2.5e-24
Smith-Waterman score: 435; 63.2% identity (78.4% similar) in 125 aa overlap (1-120:1-122)

               10        20        30        40        50        60
pF1KE3 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ
       :::.::::::::::::: :::::.:::::::::::: ::::::...::::::::::::::
CCDS78 MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSP-DPATLSKEDARLLLAALVQDYVQ
               10        20        30         40        50         

               70        80        90           100        110     
pF1KE3 MKASELEQEQEREGSSLDSPRSKRCGNLSTC----MLGTYTQDFNKFHT-FPQTAIGVGA
       ::::::.:::: .:::  :  .::  : .::    . :  ... .  .. :  : .:  :
CCDS78 MKASELKQEQETQGSS--SAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKA
      60        70          80        90       100       110       

         120       130       140 
pF1KE3 PGKKRDMSSDLERDHRPHVSMPQNAN
        :..:                     
CCDS78 FGRRRRDLQA                
       120                       




141 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:57:18 2016 done: Sun Nov  6 04:57:18 2016
 Total Scan time:  1.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]