FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3021, 108 aa
  1>>>pF1KE3021 108 - 108 aa - 108 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3156+/-0.000553; mu= 16.0699+/- 0.033
 mean_var=71.2900+/-13.764, 0's: 0 Z-trim(115.1): 17  B-trim: 46 in 1/49
 Lambda= 0.151901
 statistics sampled from 15597 (15613) to 15597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.48), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS2916.1 PROK2 gene_id:60675|Hs108|chr3          ( 108)  792 181.0 1.2e-46
CCDS46868.1 PROK2 gene_id:60675|Hs108|chr3         ( 129)  535 124.8 1.2e-29
CCDS825.1 PROK1 gene_id:84432|Hs108|chr1           ( 105)  408 96.9 2.6e-21


>>CCDS2916.1 PROK2 gene_id:60675|Hs108|chr3               (108 aa)
 initn: 792 init1: 792 opt: 792  Z-score: 950.8  bits: 181.0 E(32554): 1.2e-46
Smith-Waterman score: 792; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
               10        20        30        40        50        60

               70        80        90       100        
pF1KE3 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK
               70        80        90       100        

>>CCDS46868.1 PROK2 gene_id:60675|Hs108|chr3              (129 aa)
 initn: 532 init1: 532 opt: 535  Z-score: 645.5  bits: 124.8 E(32554): 1.2e-29
Smith-Waterman score: 740; 83.7% identity (83.7% similar) in 129 aa overlap (1-108:1-129)

               10        20        30        40        50        60
pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
               10        20        30        40        50        60

               70                             80        90         
pF1KE3 MGKLGDSCHPLTRK---------------------VPFFGRRMHHTCPCLPGLACLRTSF
       ::::::::::::::                     :::::::::::::::::::::::::
CCDS46 MGKLGDSCHPLTRKNNFGNGRQERRKRKRSKRKKEVPFFGRRMHHTCPCLPGLACLRTSF
               70        80        90       100       110       120

     100        
pF1KE3 NRFICLAQK
       :::::::::
CCDS46 NRFICLAQK
                

>>CCDS825.1 PROK1 gene_id:84432|Hs108|chr1                (105 aa)
 initn: 429 init1: 393 opt: 408  Z-score: 496.1  bits: 96.9 E(32554): 2.6e-21
Smith-Waterman score: 408; 55.2% identity (80.5% similar) in 87 aa overlap (18-104:10-96)

               10        20        30        40        50        60
pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
                        .::   ..: :::::::..: :::.: :::.:.:....:.:::
CCDS82         MRGATRVSIMLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTP
                       10        20        30        40        50  

               70        80        90       100             
pF1KE3 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK     
       .:. :. ::: ..::::: .: ::::::::.: : :   .:. :         
CCDS82 LGREGEECHPGSHKVPFFRKRKHHTCPCLPNLLCSRFPDGRYRCSMDLKNINF
             60        70        80        90       100     




108 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:44:47 2016 done: Sun Nov  6 17:44:47 2016
 Total Scan time:  1.550 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]