FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3019, 124 aa
  1>>>pF1KE3019 124 - 124 aa - 124 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9162+/-0.000534; mu= 14.3425+/- 0.032
 mean_var=73.7422+/-14.482, 0's: 0 Z-trim(115.7): 7  B-trim: 277 in 1/51
 Lambda= 0.149354
 statistics sampled from 16219 (16224) to 16219 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.498), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS1747.1 UCN gene_id:7349|Hs108|chr2             ( 124)  810 182.1 7.7e-47


>>CCDS1747.1 UCN gene_id:7349|Hs108|chr2                  (124 aa)
 initn: 810 init1: 810 opt: 810  Z-score: 954.4  bits: 182.1 E(32554): 7.7e-47
Smith-Waterman score: 810; 100.0% identity (100.0% similar) in 124 aa overlap (1-124:1-124)

               10        20        30        40        50        60
pF1KE3 MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD
               70        80        90       100       110       120

           
pF1KE3 SVGK
       ::::
CCDS17 SVGK
           




124 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:36:09 2016 done: Sun Nov  6 18:36:09 2016
 Total Scan time:  1.980 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]