FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3016, 114 aa
  1>>>pF1KE3016 114 - 114 aa - 114 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5680+/-0.000628; mu= 9.5901+/- 0.038
 mean_var=66.7430+/-13.117, 0's: 0 Z-trim(111.4): 14  B-trim: 6 in 1/50
 Lambda= 0.156990
 statistics sampled from 12303 (12311) to 12303 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.378), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS47412.1 MLN gene_id:4295|Hs108|chr6            ( 114)  724 171.7 8.5e-44
CCDS4786.1 MLN gene_id:4295|Hs108|chr6             ( 115)  718 170.4 2.2e-43
CCDS54993.1 MLN gene_id:4295|Hs108|chr6            ( 108)  665 158.4 8.5e-40


>>CCDS47412.1 MLN gene_id:4295|Hs108|chr6                 (114 aa)
 initn: 724 init1: 724 opt: 724  Z-score: 899.8  bits: 171.7 E(32554): 8.5e-44
Smith-Waterman score: 724; 99.1% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE3 MVSRKAVAALLVVHAAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MVSRKAVAALLVVHVAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE3 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
               70        80        90       100       110    

>>CCDS4786.1 MLN gene_id:4295|Hs108|chr6                  (115 aa)
 initn: 718 init1: 718 opt: 718  Z-score: 892.4  bits: 170.4 E(32554): 2.2e-43
Smith-Waterman score: 718; 99.1% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE3 MVSRKAVAALLVVHAAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MVSRKAVAALLVVHVAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE3 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK 
       :::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS47 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAAK
               70        80        90       100       110     

>>CCDS54993.1 MLN gene_id:4295|Hs108|chr6                 (108 aa)
 initn: 678 init1: 665 opt: 665  Z-score: 827.9  bits: 158.4 E(32554): 8.5e-40
Smith-Waterman score: 665; 98.1% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE3 MVSRKAVAALLVVHAAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MVSRKAVAALLVVHVAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE3 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
       :::::::::::::::::::::::::::::::::::::::::::::.        
CCDS54 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLTAK      
               70        80        90       100              




114 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:58:45 2016 done: Sun Nov  6 04:58:45 2016
 Total Scan time:  1.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]