Result of FASTA (omim) for
pFN21AE3015
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3015, 110 aa
1>>>pF1KE3015 110 - 110 aa - 110 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6436+/-0.000258; mu= 8.7572+/- 0.016
mean_var=68.1932+/-13.422, 0's: 0 Z-trim(120.8): 4 B-trim: 0 in 0/55
Lambda= 0.155311
statistics sampled from 36439 (36443) to 36439 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.427), width: 16
Scan time: 4.270
The best scores are: opt bits E(85289)
NP_775744 (OMIM: 613427) anaphase-promoting comple ( 110) 707 166.1 1e-41
NP_001229475 (OMIM: 613427) anaphase-promoting com ( 110) 707 166.1 1e-41
NP_001229476 (OMIM: 613427) anaphase-promoting com ( 110) 707 166.1 1e-41
NP_001229477 (OMIM: 613427) anaphase-promoting com ( 85) 301 75.1 2e-14
>>NP_775744 (OMIM: 613427) anaphase-promoting complex su (110 aa)
initn: 707 init1: 707 opt: 707 Z-score: 870.0 bits: 166.1 E(85289): 1e-41
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KE3 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
70 80 90 100 110
>>NP_001229475 (OMIM: 613427) anaphase-promoting complex (110 aa)
initn: 707 init1: 707 opt: 707 Z-score: 870.0 bits: 166.1 E(85289): 1e-41
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KE3 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
70 80 90 100 110
>>NP_001229476 (OMIM: 613427) anaphase-promoting complex (110 aa)
initn: 707 init1: 707 opt: 707 Z-score: 870.0 bits: 166.1 E(85289): 1e-41
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KE3 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
70 80 90 100 110
>>NP_001229477 (OMIM: 613427) anaphase-promoting complex (85 aa)
initn: 301 init1: 301 opt: 301 Z-score: 380.2 bits: 75.1 E(85289): 2e-14
Smith-Waterman score: 484; 77.3% identity (77.3% similar) in 110 aa overlap (1-110:1-85)
10 20 30 40 50 60
pF1KE3 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLED------------
10 20 30 40
70 80 90 100 110
pF1KE3 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
:::::::::::::::::::::::::::::::::::::
NP_001 -------------QQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
50 60 70 80
110 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:25:37 2016 done: Sun Nov 6 15:25:38 2016
Total Scan time: 4.270 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]