FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3010, 97 aa
  1>>>pF1KE3010 97 - 97 aa - 97 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5144+/-0.000238; mu= 13.8933+/- 0.015
 mean_var=57.3362+/-11.354, 0's: 0 Z-trim(122.6): 8  B-trim: 603 in 1/56
 Lambda= 0.169379
 statistics sampled from 41073 (41083) to 41073 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.482), width:  16
 Scan time:  4.720

The best scores are:                                      opt bits E(85289)
NP_004151 (OMIM: 600781) peptide YY preproprotein  (  97)  662 168.4 1.6e-42
XP_011523337 (OMIM: 600781) PREDICTED: peptide YY  (  97)  651 165.7   1e-41
NP_000896 (OMIM: 162640) pro-neuropeptide Y prepro (  97)  332 87.8   3e-18
NP_002713 (OMIM: 167780) pancreatic prohormone iso (  95)  177 49.9 7.5e-07
NP_001306138 (OMIM: 167780) pancreatic prohormone  ( 101)  177 49.9 7.9e-07
XP_011523280 (OMIM: 167780) PREDICTED: pancreatic  ( 104)  177 49.9 8.1e-07


>>NP_004151 (OMIM: 600781) peptide YY preproprotein [Hom  (97 aa)
 initn: 662 init1: 662 opt: 662  Z-score: 884.3  bits: 168.4 E(85289): 1.6e-42
Smith-Waterman score: 662; 99.0% identity (99.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE3 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYASLRHYLNLVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYASLRHYLNLVT
               10        20        30        40        50        60

               70        80        90       
pF1KE3 RQRYGKRDGPDRLLSKTFFPDGEDRPVRSRSEGPDLW
       ::::::::::: :::::::::::::::::::::::::
NP_004 RQRYGKRDGPDTLLSKTFFPDGEDRPVRSRSEGPDLW
               70        80        90       

>>XP_011523337 (OMIM: 600781) PREDICTED: peptide YY isof  (97 aa)
 initn: 651 init1: 651 opt: 651  Z-score: 869.8  bits: 165.7 E(85289): 1e-41
Smith-Waterman score: 651; 97.9% identity (97.9% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE3 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYASLRHYLNLVT
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_011 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPREDASPEELNRYYASLRHYLNLVT
               10        20        30        40        50        60

               70        80        90       
pF1KE3 RQRYGKRDGPDRLLSKTFFPDGEDRPVRSRSEGPDLW
       ::::::::::: :::::::::::::::::::::::::
XP_011 RQRYGKRDGPDTLLSKTFFPDGEDRPVRSRSEGPDLW
               70        80        90       

>>NP_000896 (OMIM: 162640) pro-neuropeptide Y preproprot  (97 aa)
 initn: 314 init1: 286 opt: 332  Z-score: 448.5  bits: 87.8 E(85289): 3e-18
Smith-Waterman score: 332; 54.1% identity (80.0% similar) in 85 aa overlap (13-97:13-97)

               10        20        30        40        50        60
pF1KE3 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYASLRHYLNLVT
                   :. :.::::::::..::: ::. :::::  :.. :::..::::.::.:
NP_000 MLGNKRLGLSGLTLALSLLVCLGALAEAYPSKPDNPGEDAPAEDMARYYSALRHYINLIT
               10        20        30        40        50        60

               70        80        90       
pF1KE3 RQRYGKRDGPDRLLSKTFFPDGEDRPVRSRSEGPDLW
       :::::::..:. :.:  .. .. .   :.: : : .:
NP_000 RQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
               70        80        90       

>>NP_002713 (OMIM: 167780) pancreatic prohormone isoform  (95 aa)
 initn: 175 init1: 167 opt: 177  Z-score: 244.0  bits: 49.9 E(85289): 7.5e-07
Smith-Waterman score: 177; 46.8% identity (71.0% similar) in 62 aa overlap (12-73:15-74)

                  10        20        30        40        50       
pF1KE3    MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYASLRHYLN
                     : : : :   :::  .. :..:  ::..:.::.. .: :.::.:.:
NP_002 MAAARLCLSLLLLSTCVALLLQPLLGA--QGAPLEPVYPGDNATPEQMAQYAADLRRYIN
               10        20          30        40        50        

        60        70        80        90       
pF1KE3 LVTRQRYGKRDGPDRLLSKTFFPDGEDRPVRSRSEGPDLW
       ..:: :::::   : :                        
NP_002 MLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL   
       60        70        80        90        

>>NP_001306138 (OMIM: 167780) pancreatic prohormone isof  (101 aa)
 initn: 175 init1: 167 opt: 177  Z-score: 243.6  bits: 49.9 E(85289): 7.9e-07
Smith-Waterman score: 177; 46.8% identity (71.0% similar) in 62 aa overlap (12-73:21-80)

                        10        20        30        40        50 
pF1KE3          MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYAS
                           : : : :   :::  .. :..:  ::..:.::.. .: :.
NP_001 MCDCDLMAAARLCLSLLLLSTCVALLLQPLLGA--QGAPLEPVYPGDNATPEQMAQYAAD
               10        20        30          40        50        

              60        70        80        90       
pF1KE3 LRHYLNLVTRQRYGKRDGPDRLLSKTFFPDGEDRPVRSRSEGPDLW
       ::.:.:..:: :::::   : :                        
NP_001 LRRYINMLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL   
       60        70        80        90       100    

>>XP_011523280 (OMIM: 167780) PREDICTED: pancreatic proh  (104 aa)
 initn: 175 init1: 167 opt: 177  Z-score: 243.4  bits: 49.9 E(85289): 8.1e-07
Smith-Waterman score: 177; 46.8% identity (71.0% similar) in 62 aa overlap (12-73:24-83)

                           10        20        30        40        
pF1KE3             MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRY
                              : : : :   :::  .. :..:  ::..:.::.. .:
XP_011 MTFVFALWNMAAARLCLSLLLLSTCVALLLQPLLGA--QGAPLEPVYPGDNATPEQMAQY
               10        20        30          40        50        

       50        60        70        80        90       
pF1KE3 YASLRHYLNLVTRQRYGKRDGPDRLLSKTFFPDGEDRPVRSRSEGPDLW
        :.::.:.:..:: :::::   : :                        
XP_011 AADLRRYINMLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL   
       60        70        80        90       100       




97 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:14:33 2016 done: Sun Nov  6 12:14:34 2016
 Total Scan time:  4.720 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]