FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3006, 85 aa
  1>>>pF1KE3006 85 - 85 aa - 85 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2870+/-0.000294; mu= 7.2835+/- 0.018
 mean_var=52.5207+/-10.444, 0's: 0 Z-trim(116.1): 10  B-trim: 0 in 0/52
 Lambda= 0.176974
 statistics sampled from 26952 (26957) to 26952 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.316), width:  16
 Scan time:  4.080

The best scores are:                                      opt bits E(85289)
NP_057701 (OMIM: 610553) ubiquitin-fold modifier 1 (  85)  543 146.1 6.5e-36
NP_001273632 (OMIM: 610553) ubiquitin-fold modifie (  83)  519 140.0 4.4e-34
NP_001273633 (OMIM: 610553) ubiquitin-fold modifie ( 103)  417 113.9 3.7e-26
NP_001273634 (OMIM: 610553) ubiquitin-fold modifie (  71)  398 109.1 7.6e-25
NP_001273635 (OMIM: 610553) ubiquitin-fold modifie (  71)  398 109.1 7.6e-25


>>NP_057701 (OMIM: 610553) ubiquitin-fold modifier 1 iso  (85 aa)
 initn: 543 init1: 543 opt: 543  Z-score: 765.8  bits: 146.1 E(85289): 6.5e-36
Smith-Waterman score: 543; 100.0% identity (100.0% similar) in 85 aa overlap (1-85:1-85)

               10        20        30        40        50        60
pF1KE3 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
               10        20        30        40        50        60

               70        80     
pF1KE3 QTAGNVFLKHGSELRIIPRDRVGSC
       :::::::::::::::::::::::::
NP_057 QTAGNVFLKHGSELRIIPRDRVGSC
               70        80     

>>NP_001273632 (OMIM: 610553) ubiquitin-fold modifier 1   (83 aa)
 initn: 407 init1: 407 opt: 519  Z-score: 732.8  bits: 140.0 E(85289): 4.4e-34
Smith-Waterman score: 519; 97.6% identity (97.6% similar) in 85 aa overlap (1-85:1-83)

               10        20        30        40        50        60
pF1KE3 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
       ::::::::::::::::::::  ::::::::::::::::::::::::::::::::::::::
NP_001 MSKVSFKITLTSDPRLPYKV--VPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
               10        20          30        40        50        

               70        80     
pF1KE3 QTAGNVFLKHGSELRIIPRDRVGSC
       :::::::::::::::::::::::::
NP_001 QTAGNVFLKHGSELRIIPRDRVGSC
       60        70        80   

>>NP_001273633 (OMIM: 610553) ubiquitin-fold modifier 1   (103 aa)
 initn: 417 init1: 417 opt: 417  Z-score: 590.5  bits: 113.9 E(85289): 3.7e-26
Smith-Waterman score: 417; 100.0% identity (100.0% similar) in 65 aa overlap (21-85:39-103)

                         10        20        30        40        50
pF1KE3           MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAII
                                     ::::::::::::::::::::::::::::::
NP_001 TPRSLHLFTSSTFLARALPGAFPTGACEERLSVPESTPFTAVLKFAAEEFKVPAATSAII
       10        20        30        40        50        60        

               60        70        80     
pF1KE3 TNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGSC
       :::::::::::::::::::::::::::::::::::
NP_001 TNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGSC
       70        80        90       100   

>>NP_001273634 (OMIM: 610553) ubiquitin-fold modifier 1   (71 aa)
 initn: 398 init1: 398 opt: 398  Z-score: 567.0  bits: 109.1 E(85289): 7.6e-25
Smith-Waterman score: 398; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)

               10        20        30        40        50        60
pF1KE3 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
               10        20        30        40        50        60

               70        80     
pF1KE3 QTAGNVFLKHGSELRIIPRDRVGSC
       ::::                     
NP_001 QTAGLAVEIQP              
               70               

>>NP_001273635 (OMIM: 610553) ubiquitin-fold modifier 1   (71 aa)
 initn: 398 init1: 398 opt: 398  Z-score: 567.0  bits: 109.1 E(85289): 7.6e-25
Smith-Waterman score: 398; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)

               10        20        30        40        50        60
pF1KE3 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
               10        20        30        40        50        60

               70        80     
pF1KE3 QTAGNVFLKHGSELRIIPRDRVGSC
       ::::                     
NP_001 QTAGLAVEIQP              
               70               




85 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:36:50 2016 done: Sun Nov  6 14:36:51 2016
 Total Scan time:  4.080 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]