Result of FASTA (omim) for
pFN21AE3005
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3005, 83 aa
1>>>pF1KE3005 83 - 83 aa - 83 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1304+/-0.000225; mu= 5.5192+/- 0.014
mean_var=84.1387+/-16.546, 0's: 0 Z-trim(125.7): 7 B-trim: 896 in 2/56
Lambda= 0.139822
statistics sampled from 50082 (50092) to 50082 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.883), E-opt: 0.2 (0.587), width: 16
Scan time: 4.050
The best scores are: opt bits E(85289)
NP_006196 (OMIM: 601190,610024) retinal cone rhodo ( 83) 583 125.4 1.1e-29
XP_016874920 (OMIM: 601190,610024) PREDICTED: reti ( 83) 583 125.4 1.1e-29
XP_016880224 (OMIM: 180073,268000,613582) PREDICTE ( 87) 475 103.6 4e-23
NP_002593 (OMIM: 180073,268000,613582) retinal rod ( 87) 475 103.6 4e-23
XP_016880225 (OMIM: 180073,268000,613582) PREDICTE ( 87) 475 103.6 4e-23
XP_006722005 (OMIM: 180073,268000,613582) PREDICTE ( 137) 475 103.7 5.9e-23
XP_016880223 (OMIM: 180073,268000,613582) PREDICTE ( 157) 475 103.7 6.6e-23
>>NP_006196 (OMIM: 601190,610024) retinal cone rhodopsin (83 aa)
initn: 583 init1: 583 opt: 583 Z-score: 654.2 bits: 125.4 E(85289): 1.1e-29
Smith-Waterman score: 583; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83)
10 20 30 40 50 60
pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDI
10 20 30 40 50 60
70 80
pF1KE3 TVICPWEAFSHLELHELAQFGII
:::::::::::::::::::::::
NP_006 TVICPWEAFSHLELHELAQFGII
70 80
>>XP_016874920 (OMIM: 601190,610024) PREDICTED: retinal (83 aa)
initn: 583 init1: 583 opt: 583 Z-score: 654.2 bits: 125.4 E(85289): 1.1e-29
Smith-Waterman score: 583; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83)
10 20 30 40 50 60
pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDI
10 20 30 40 50 60
70 80
pF1KE3 TVICPWEAFSHLELHELAQFGII
:::::::::::::::::::::::
XP_016 TVICPWEAFSHLELHELAQFGII
70 80
>>XP_016880224 (OMIM: 180073,268000,613582) PREDICTED: r (87 aa)
initn: 475 init1: 475 opt: 475 Z-score: 536.1 bits: 103.6 E(85289): 4e-23
Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:19-87)
10 20 30 40 50
pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGL
::.::::::::::::::::::::::::::.::::::::::::
XP_016 MNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGL
10 20 30 40 50 60
60 70 80
pF1KE3 GTDITVICPWEAFSHLELHELAQFGII
:::::::::::::.:::::::::.:::
XP_016 GTDITVICPWEAFNHLELHELAQYGII
70 80
>>NP_002593 (OMIM: 180073,268000,613582) retinal rod rho (87 aa)
initn: 475 init1: 475 opt: 475 Z-score: 536.1 bits: 103.6 E(85289): 4e-23
Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:19-87)
10 20 30 40 50
pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGL
::.::::::::::::::::::::::::::.::::::::::::
NP_002 MNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGL
10 20 30 40 50 60
60 70 80
pF1KE3 GTDITVICPWEAFSHLELHELAQFGII
:::::::::::::.:::::::::.:::
NP_002 GTDITVICPWEAFNHLELHELAQYGII
70 80
>>XP_016880225 (OMIM: 180073,268000,613582) PREDICTED: r (87 aa)
initn: 475 init1: 475 opt: 475 Z-score: 536.1 bits: 103.6 E(85289): 4e-23
Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:19-87)
10 20 30 40 50
pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGL
::.::::::::::::::::::::::::::.::::::::::::
XP_016 MNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGL
10 20 30 40 50 60
60 70 80
pF1KE3 GTDITVICPWEAFSHLELHELAQFGII
:::::::::::::.:::::::::.:::
XP_016 GTDITVICPWEAFNHLELHELAQYGII
70 80
>>XP_006722005 (OMIM: 180073,268000,613582) PREDICTED: r (137 aa)
initn: 475 init1: 475 opt: 475 Z-score: 533.1 bits: 103.7 E(85289): 5.9e-23
Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:69-137)
10 20 30 40
pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVK
::.::::::::::::::::::::::::::.
XP_006 SQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQ
40 50 60 70 80 90
50 60 70 80
pF1KE3 GFGDDIPGMEGLGTDITVICPWEAFSHLELHELAQFGII
:::::::::::::::::::::::::.:::::::::.:::
XP_006 GFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
100 110 120 130
>>XP_016880223 (OMIM: 180073,268000,613582) PREDICTED: r (157 aa)
initn: 475 init1: 475 opt: 475 Z-score: 532.2 bits: 103.7 E(85289): 6.6e-23
Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:89-157)
10 20 30 40
pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVK
::.::::::::::::::::::::::::::.
XP_016 SQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQ
60 70 80 90 100 110
50 60 70 80
pF1KE3 GFGDDIPGMEGLGTDITVICPWEAFSHLELHELAQFGII
:::::::::::::::::::::::::.:::::::::.:::
XP_016 GFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
120 130 140 150
83 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:54:58 2016 done: Sun Nov 6 14:54:58 2016
Total Scan time: 4.050 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]