FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3004, 76 aa
  1>>>pF1KE3004 76 - 76 aa - 76 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0555+/-0.000519; mu= 9.0327+/- 0.032
 mean_var=57.7636+/-11.382, 0's: 0 Z-trim(113.0): 11  B-trim: 135 in 1/49
 Lambda= 0.168751
 statistics sampled from 13720 (13727) to 13720 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.422), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS13334.1 PKIG gene_id:11142|Hs108|chr20         (  76)  493 127.1 1.1e-30


>>CCDS13334.1 PKIG gene_id:11142|Hs108|chr20              (76 aa)
 initn: 493 init1: 493 opt: 493  Z-score: 664.7  bits: 127.1 E(32554): 1.1e-30
Smith-Waterman score: 493; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KE3 MMEVESSYSDFISCDRTGRRNAVPDIQGDSEAVSVRKLAGDMGELALEGAEGQVEGSAPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MMEVESSYSDFISCDRTGRRNAVPDIQGDSEAVSVRKLAGDMGELALEGAEGQVEGSAPD
               10        20        30        40        50        60

               70      
pF1KE3 KEAGNQPQSSDGTTSS
       ::::::::::::::::
CCDS13 KEAGNQPQSSDGTTSS
               70      




76 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:03:58 2016 done: Sun Nov  6 13:03:58 2016
 Total Scan time:  1.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]